Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1187 ATGGGAACCAAGTTTTTAGCGTTTGGTTGCTTGCGAAATGTGGCATCGCCGCGACCTCACTACCCTTCCATGCCGAGGTACCCCAGAGGCGTCACTGTAGAAGAAGCCAACACCGATATGGTTATGGCAAAAGCACTCTTCTCCGTCACCGGAATGACCTGCTCCGCCTGCGCTGCCTCGGTCGAGAAAGCCGTTAAGCGCCTTCCCGGAATTCACGAAGCCCTCGTTGATGCTCTCAACAACCGAGCCCAAGTCCTCTTCTACCCTTCCTTCGTTAACGAGGAGACCATTCGTGAGGCCATTGAAGATGCGGGATTTGAAGCGACATTAGTCACAAATGACACAAATGAGACATCTGTTCAGGCATGCCGCTTAAGAATCCAAGGAATGACATGCACCTCATGTTCCTCAAGTGTTGAATCTGCTTTGCAATCTATTCAAGGAGTGGTCAAAGCCCAAGTGGCTCTAGCAACTGAGGAAGCTGAAGTTCACTACACTCCAAATGTTGTTAGCTACAATCAAATATTGGAAGCAATACAAGACGCTGGTTTTGAAGCCACACTCATTAGCACAGGTGAAGACATGAGCAAAATACACCTTCAGATTGAAGGTGTAAGAACTGGTCATTCCATGAGAATCATTGAAAATTCTCTCCATGCCCTTCCAGGGGTCCAAGGTGTAGAAACAAGTCCTGAATTGAACAAAGTATCTCTTTCTTATAAACCTGACATGATTGGACCAAGAAATTTCATTAATGTGATTCAAGAAACCGGGTCTAGGCGTTTCAGGGCCAAAATTTTCCCTGAAGAAGGAGGAAGAAGAAATAGTCATAGGAGGGAGGAAATTAAGCAATACTATAGATCCTTCTTATGGAGTTTGGTTTTTACTGTGCCTGTGTTTCTAACCTCTATGGTGCTTATGTATATCCCCGGAATAAAGCATGGACTTGATGCCAAAGTTGTGAACATGCTTACAGTGGGGGAAGTTTTAAGATGGGTGCTTGCTACACCAGTGCAATTTATTATAGGCAAGAGATTTTACTCTGGTTCTTTTAAAGCATTGCGCAATGGTTCTCCTAACATGGATGTTTTGATTGCTCTGGGGACAAATGCAGCATATTTCTATTCAGTATATTCAGTCCTGAGAGCTGCTACAGCACAAGATTTCAAGGGTACTGATTTTTTTGAGACTAGTGCTATGCTTATTTCTTTTATTTTGTTGGGGAAGTACCTTGAAGTTTTGGCCAAGGGGAAGACATCCGATGCAATTGCCAAGCTCATGAACTTGACACCTGATACTGCTATATTGTTGACACTGGACAGTGAAGGAAATGTTGTTGGGGAAGAAGAAATTGATAGCAGGTTGATTCAAAAGAATGATGTGATTAAAGTTGTTCCCGGTGCAAAAGTAGCTTCTGATGGACTTGTTATTTGGGGTCAAAGCCACGTGAATGAGAGCATGATAACTGGTGAAGCACGTCCTGTGGCAAAGAGGAAAGGCGACACTGTTATTGGAGGAACTGTGAATGAGAATGGAGTGTTGCATTTTAAGGCTACATGGGTTGGATCAGAGAGTGCTCTTTCTCAGATTGTTAGACTTGTTGAGTCAGCGCAGATGGCCAAGGCTCCTGTGCAGAAATTTGCTGATCGCATTTCCAAATACTTCGTGCCTCTGGTTATTTTAATCTCTTTATCAACGTGGCTTGCTTGGTATCTAGCTGGAAGATTTCATGCTTACCCCAAGTCTTGGATACCATCGTCCATGGACAGTTTTCAGCTTGCTTTGCAGTTTGGAATTTCTGTCATGGTCATAGCTTGCCCATGTGCCTTAGGTTTAGCAACACCAACTGCTGTTATGGTTGGCACTGGAGTAGGTGCATCTCAGGGTGTACTGATTAAAGGAGGTCAAGCATTAGAAAATGCTCATAAGGTGAACTGTGTTGTATTTGACAAGACAGGTACTCTCACTATTGGGAAGCCTGTGGTAGTAAATACAAAATTGTTGATAAATATGTTACTCCAGGAATTCTATGAACTTGTGGCTGCAGCTGAGGTTAACAGTGAGCATCCACTGGCGAAGGCCATAGTTGAGTATGCAAAAAAATTGAGAGATGAAGAGAACCCAACTTGGCCAGAAGCAAGCGATTTTGTGTCCATAGCTGGACATGGAGTGAAGGCCACTGTTCGGAACAAGGAAATAATTGTGGGTAACAAGACCTTGTTAGGGGACCACAATATTGCACTTCCTGTTGAGGCTGAAGAGATGCTGACAGAAGCAGAAGGAATGGCTCAAACTGGAATATTAGTATGTATAAATAAGGAAGTAGTTGGAGTTGTAGCAGTATCTGATCCACTGAAACCAAGTGCCCAAGAAGTCATTTCCATTCTAAAGTCTATGAAAATAAGGAGCATTATGGTGACGGGGGACAATTGGGGTACTGCAAATTCTATAGCAAAGGAAGTTGGAATTGAAACTGTTATTGCCGAGGCCAAACCGGAGCAGAAGGCAGAGCAAGTGAAGAACTTGCAGGGTGGTGGATACACAGTGGCTATGGTGGGAGATGGTATTAATGATTCTCCAGCACTTGTGGCGGCAGATGTAGGAATGGCAATAGGTGCTGGCACAGACATAGCTATTGAGGCTGCTGATATTGTCCTGATGAAGAGCAACTTAGAGGATGTCATAACTGCCATTCACCTTTCTAGAAAAACCTTTTCTCGTATCCGCCTTAACTACATTTGGGCTTTGGGCTATAATCTCCTTGGCATTCCAATTGCTGCTGGTGCTCTTTTCCCTTCTACACGTTTTCGTTTGCCACCATGGATTGCTGGTGCTGCCATGGCTGCCTCTTCTGTCAGTGTTGTTTGCTGTTCTCTACTGTTGAAGTATTATAGGAGACCCAAGGGGCTAGACAACCTTGAGATACGGGGCATAAGCATTCAGTGA 2946 0.4409 MGTKFLAFGCLRNVASPRPHYPSMPRYPRGVTVEEANTDMVMAKALFSVTGMTCSACAASVEKAVKRLPGIHEALVDALNNRAQVLFYPSFVNEETIREAIEDAGFEATLVTNDTNETSVQACRLRIQGMTCTSCSSSVESALQSIQGVVKAQVALATEEAEVHYTPNVVSYNQILEAIQDAGFEATLISTGEDMSKIHLQIEGVRTGHSMRIIENSLHALPGVQGVETSPELNKVSLSYKPDMIGPRNFINVIQETGSRRFRAKIFPEEGGRRNSHRREEIKQYYRSFLWSLVFTVPVFLTSMVLMYIPGIKHGLDAKVVNMLTVGEVLRWVLATPVQFIIGKRFYSGSFKALRNGSPNMDVLIALGTNAAYFYSVYSVLRAATAQDFKGTDFFETSAMLISFILLGKYLEVLAKGKTSDAIAKLMNLTPDTAILLTLDSEGNVVGEEEIDSRLIQKNDVIKVVPGAKVASDGLVIWGQSHVNESMITGEARPVAKRKGDTVIGGTVNENGVLHFKATWVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVILISLSTWLAWYLAGRFHAYPKSWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALENAHKVNCVVFDKTGTLTIGKPVVVNTKLLINMLLQEFYELVAAAEVNSEHPLAKAIVEYAKKLRDEENPTWPEASDFVSIAGHGVKATVRNKEIIVGNKTLLGDHNIALPVEAEEMLTEAEGMAQTGILVCINKEVVGVVAVSDPLKPSAQEVISILKSMKIRSIMVTGDNWGTANSIAKEVGIETVIAEAKPEQKAEQVKNLQGGGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIHLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPSTRFRLPPWIAGAAMAASSVSVVCCSLLLKYYRRPKGLDNLEIRGISIQ* 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1187 981 Pfam Heavy-metal-associated domain 125 185 IPR006121 GO:0046872
Apr2g1187 981 Pfam Heavy-metal-associated domain 47 107 IPR006121 GO:0046872
Apr2g1187 981 SFLD C1.7: P-type atpase like 630 904 - -
Apr2g1187 981 ProSiteProfiles Heavy-metal-associated domain profile. 44 110 IPR006121 GO:0046872
Apr2g1187 981 SUPERFAMILY HMA, heavy metal-associated domain 119 192 IPR036163 GO:0046872
Apr2g1187 981 PANTHER ATP7, ISOFORM B 10 972 - -
Apr2g1187 981 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 361 961 IPR027256 GO:0006812|GO:0016021|GO:0019829
Apr2g1187 981 Gene3D - 733 783 IPR023299 GO:0000166
Apr2g1187 981 Gene3D - 655 732 IPR023299 GO:0000166
Apr2g1187 981 ProSitePatterns E1-E2 ATPases phosphorylation site. 650 656 IPR018303 -
Apr2g1187 981 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 401 934 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr2g1187 981 Pfam haloacid dehalogenase-like hydrolase 644 866 - -
Apr2g1187 981 Gene3D - 416 538 - -
Apr2g1187 981 ProSitePatterns Heavy-metal-associated domain. 127 156 IPR017969 GO:0046872
Apr2g1187 981 TIGRFAM TIGR00003: copper ion binding protein 125 186 IPR006122 GO:0005507
Apr2g1187 981 TIGRFAM TIGR00003: copper ion binding protein 46 108 IPR006122 GO:0005507
Apr2g1187 981 Pfam E1-E2 ATPase 447 626 - -
Apr2g1187 981 CDD P-type_ATPase_Cu-like 287 962 - -
Apr2g1187 981 Gene3D - 120 193 - -
Apr2g1187 981 Gene3D - 42 114 - -
Apr2g1187 981 ProSiteProfiles Heavy-metal-associated domain profile. 122 188 IPR006121 GO:0046872
Apr2g1187 981 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 10 972 - -
Apr2g1187 981 SUPERFAMILY Calcium ATPase, transmembrane domain M 393 928 IPR023298 -
Apr2g1187 981 CDD HMA 125 187 IPR006121 GO:0046872
Apr2g1187 981 Gene3D - 194 267 - -
Apr2g1187 981 SFLD p-type atpase 630 904 IPR044492 -
Apr2g1187 981 SUPERFAMILY HMA, heavy metal-associated domain 192 260 IPR036163 GO:0046872
Apr2g1187 981 ProSiteProfiles Heavy-metal-associated domain profile. 197 258 IPR006121 GO:0046872
Apr2g1187 981 SUPERFAMILY HMA, heavy metal-associated domain 42 113 IPR036163 GO:0046872
Apr2g1187 981 CDD HMA 47 109 IPR006121 GO:0046872
Apr2g1187 981 Gene3D - 615 909 IPR023214 -
Apr2g1187 981 SUPERFAMILY Calcium ATPase, transduction domain A 448 534 IPR008250 -
Apr2g1187 981 SUPERFAMILY HAD-like 647 958 IPR036412 -
Apr2g1187 981 PRINTS P-type cation-transporting ATPase superfamily signature 484 498 - -
Apr2g1187 981 PRINTS P-type cation-transporting ATPase superfamily signature 648 662 - -
Apr2g1187 981 PRINTS P-type cation-transporting ATPase superfamily signature 777 788 - -
Apr2g1187 981 PRINTS P-type cation-transporting ATPase superfamily signature 799 809 - -
Apr2g1187 981 PRINTS P-type cation-transporting ATPase superfamily signature 852 871 - -
Apr2g1187 981 PRINTS P-type cation-transporting ATPase superfamily signature 875 887 - -
Apr2g1187 981 PRINTS Copper-transporting ATPase 1 signature 44 69 - -
Apr2g1187 981 PRINTS Copper-transporting ATPase 1 signature 70 93 - -
Apr2g1187 981 PRINTS Copper-transporting ATPase 1 signature 99 119 - -
Apr2g1187 981 PRINTS Copper-transporting ATPase 1 signature 145 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1187 Apr-Chr2 18101255 18108097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1187 1 981 Primary Pumps ATPases AT1G63440 75.529 0.0 1531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1187 K17686 - gmx:100810141 1722.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1187 2 18101255 18108097 Apr2g1187 2 18101255 18108097 ECH
Apr7g0599 7 12532050 12536646 Apr2g1187 2 18101255 18108097 PCT