Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1178 ATGGCGTTCAGCGGGACCCAACAAAAGTGCAAGGCTTGCGATAAAACTGTCCACTTCGTCGAATCTTTATCTGCCGATGGAGCTGTTTATCACAAAAACTGCTTCAGATGCAGCCATTGCAATGGTCTTCTTGTGATAAGCAACTACTCATCGATGGAAGGAGTTTTGTACTGCAAGGTTCACTTTGAGCAGCTTTTCAAGGAAACTGGAACCTACACCAAGAAATTCCAGTCGGCTGGAAAGCCTCCAAACGAGCTGTCTAGAGCCCCTAGCAAACTTTCAGCTTTCTTCTCTGGAACTCAAGACAAATGTTCAAAATGCAAGAAAACCGTGTATCCATTGGAAAAGTTGACCGTTGAAGGTGAGTTTTACCACAAATCATGCTTTAGGTGTGCACATGGAGGATGTTTCCTCACTCCTTCATCCTATGCTGCTCTTGATGGATTTCTGTATTGCAAGCCTCACTTCTCTCAGTTGTTCAAGGAGAAAGGTAGTTATAGTTATCTATCCAAGACAGCTTCCATGAAGAAGAACGAAGAGCAAATGGCTGCTGAGAAAACTGAGGATAAGACAGAGTCAGAAACAGAGAAAGAGACAGAGAAGACAGAGACAGAGGCAGAGGCAGAGACAGCAAAGGAAGCAGAACAAGGTGACGATGATGCTGTCCCCGCGCAAGAGTAG 681 0.4493 MAFSGTQQKCKACDKTVHFVESLSADGAVYHKNCFRCSHCNGLLVISNYSSMEGVLYCKVHFEQLFKETGTYTKKFQSAGKPPNELSRAPSKLSAFFSGTQDKCSKCKKTVYPLEKLTVEGEFYHKSCFRCAHGGCFLTPSSYAALDGFLYCKPHFSQLFKEKGSYSYLSKTASMKKNEEQMAAEKTEDKTESETEKETEKTETEAEAETAKEAEQGDDDAVPAQE* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1178 226 Gene3D Cysteine Rich Protein 97 220 - -
Apr2g1178 226 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Apr2g1178 226 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Apr2g1178 226 MobiDBLite consensus disorder prediction 174 226 - -
Apr2g1178 226 Coils Coil 176 214 - -
Apr2g1178 226 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Apr2g1178 226 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Apr2g1178 226 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Apr2g1178 226 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Apr2g1178 226 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 168 - -
Apr2g1178 226 SMART lim_4 9 61 IPR001781 -
Apr2g1178 226 SMART lim_4 103 155 IPR001781 -
Apr2g1178 226 MobiDBLite consensus disorder prediction 178 219 - -
Apr2g1178 226 CDD LIM1_SF3 6 68 - -
Apr2g1178 226 Pfam LIM domain 10 65 IPR001781 -
Apr2g1178 226 Pfam LIM domain 104 159 IPR001781 -
Apr2g1178 226 Gene3D Cysteine Rich Protein 4 74 - -
Apr2g1178 226 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 213 - -
Apr2g1178 226 PANTHER OS06G0237300 PROTEIN 1 213 IPR045268 GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1178 Apr-Chr2 18013610 18015009 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Apr2g1178 LIM 3e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1178 - K24413 gmx:100499865 360.918