Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1175 ATGTGGGGTCGGATCGTATGCGAAGGGCGGAGGGTACTTCCCTGCAACCTGCGACTGGTACGAAACATGGGTGGCGGTCCTCGCACGTTTCCCGGCGGCGTCAACAAATGGAAATGGAAACGCATGCACGAGAAACGAGCGAAAGACAAACAAAACCGACTTCTGGAGCAAGAAAAACAACTCTACGAAGCTCGCATTCGTTCTCACATTCGCTCCACCCTCTCCCCTGACCACCGCTCCGCCGCCGCGGCCACCCACCAACCTCTCTCCCCCCACCACCACGTCAAAGCCCTCGCCGATCGATTCATCAAAGAAGGTGCCGAAGATCTCTGGAACACTCACGATGGTCCCCTAACACCCCCACCAACAGTATCAACAACACCTTCGCCGCTCGATTTGGGGAAACTTGTACCGCAACTTCAGAAACGGAGTTTTGTCACTGTTAGGGGTTACCGTTCTGTTGCTGGGGTTGGGAATAATCGTGTTGGCACCGAAAAGCGAAGGTTTTGGAGGAATGATAGTGATGGGTCTTCTAGTGAGAGTGAGAATGAGGGTGAAATTGTAAGTGAGAATTGGGGTTTGAAGATGGGTAGTAGAGCTTCTTTGGGGAAATATGATGTGAAGAGAGAGAGAAGGGTGGTTCCCAATTCGCATGAAGAGGAAAGACAGTTATCGGAGCAGGTTGAGTTGATCAAGTATGAACTTAATAAGAGGAAGTTGAGCCAGAATGAGGAGCAAGAGGATGAGGAACAACAAAGCGTTTTAAGTCAGACTAGATTTGACGAGTGTGGTATATCGCCTTTGACGGTTAAGGCGCTTTCATCTGCTGGTTATATTCATATGACCCGGGTACAAGAGGCTAGCCTCCCTATTTGCCTTGAGGGTATGGATGCTTTAGTCAAAGCTAAAACTGGCACTGGAAAAAGTGCAGCTTTCTTGCTTCCTGCTATTGAAACAGTTCTAAAAGCTATAAGTAGCAGTACCTCTCGACGTGTGCCTCCAAATCCAATACTTGTTCTTATTCTTTGCCCTACCAGAGAACTTGCTAGTCAAATTGCAGCTGAAGCAAAGGTTTTGATGAAATATCACGATGGCATTGGGGTACAGACTCTTGTTGGAGGTGTACGATTTAAAGTTGACCAAAAACGCCTTGAATCAGATCCATGCCAGATACTTGTTGCTACACCTGGTAGGTTGCTGGATCATATTGAGAATAAGTCTGGAATATCTGTGCGACTAATGGGATTGCAGATGCTTGTACTTGATGAAGCTGATCATTTACTGGACCTGGGATTTCGAAAGGATGTAGAAAAAATTGTTGATTGTTTGCCTCGTCAAAGGCAATCGTTGTTGTTTTCTGCAACCATACCAAAGGAGGTCCGCCGTATATCTCAGCTTGTTTTGAAAAGGGAACACAAATATGTTGATACAGTTGGAATTGGCTCTGTGGAAACTCCGGTTCAGGTAAAGCAATCTTATCTTATTGCTCCTCACGAGTCACATTTTCAATTTGTGTACCATTTTCTGAAGGAGCATATCTTGCAAGCACCTGAATACAAGGTTATTGTTTTCTGTGTAACTGGGATGGTGACATCACTCATGTATCACCTTCTTCGGGAAATGAAAATGAATGTCAGGGAGATACATTCTCGAAAACCTCAGCTTTATCGAGCACGCGTATCAGAGGAGTTCAGGAAATCCAAACAATTGATTCTTGTTTCATCTGATGTTTCATCACGTGGAATGAACTATCCTGATGTTACTTTAGTCATACAGGTGGGAATTCCTTTCGACCGAGAACAATACATACATCGTCTTGGAAGAACGGGACGGGAAGGCAAAGAAGGGGAAGGCATATTGTTGATTGCTCCATGGGAAGAGTATTTTTTAGAGGAAATCAAGGATCTTCCTCTACAGAAATTCCCCTTACCAGATATAGATCCACAGACGAAGCTTAAGATTGAGAATTCAATGGCTAAGATTGATAATGACATCAAAGAAGCAGCATATCATGCTTGGCTTGGTTATTATAACTCCATCAGGGAAATTGGGAGGGAGAAGACCACTATAGCTGAGCTAGCAAACCGATTTTCTGAATCAATTGGTTTACAAAGGCCTCCTGCTCTCTTTCGAAAAACTGCAATAAAAATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGTAGATAG 2190 0.4461 MWGRIVCEGRRVLPCNLRLVRNMGGGPRTFPGGVNKWKWKRMHEKRAKDKQNRLLEQEKQLYEARIRSHIRSTLSPDHRSAAAATHQPLSPHHHVKALADRFIKEGAEDLWNTHDGPLTPPPTVSTTPSPLDLGKLVPQLQKRSFVTVRGYRSVAGVGNNRVGTEKRRFWRNDSDGSSSESENEGEIVSENWGLKMGSRASLGKYDVKRERRVVPNSHEEERQLSEQVELIKYELNKRKLSQNEEQEDEEQQSVLSQTRFDECGISPLTVKALSSAGYIHMTRVQEASLPICLEGMDALVKAKTGTGKSAAFLLPAIETVLKAISSSTSRRVPPNPILVLILCPTRELASQIAAEAKVLMKYHDGIGVQTLVGGVRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISVRLMGLQMLVLDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPKEVRRISQLVLKREHKYVDTVGIGSVETPVQVKQSYLIAPHESHFQFVYHFLKEHILQAPEYKVIVFCVTGMVTSLMYHLLREMKMNVREIHSRKPQLYRARVSEEFRKSKQLILVSSDVSSRGMNYPDVTLVIQVGIPFDREQYIHRLGRTGREGKEGEGILLIAPWEEYFLEEIKDLPLQKFPLPDIDPQTKLKIENSMAKIDNDIKEAAYHAWLGYYNSIREIGREKTTIAELANRFSESIGLQRPPALFRKTAIKMGLKDIPGIRIRR* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1175 729 Coils Coil 230 250 - -
Apr2g1175 729 PANTHER RNA HELICASE 238 728 - -
Apr2g1175 729 PANTHER RNA HELICASE 27 117 - -
Apr2g1175 729 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 508 658 IPR001650 -
Apr2g1175 729 MobiDBLite consensus disorder prediction 168 189 - -
Apr2g1175 729 CDD SF2_C_DEAD 489 622 - -
Apr2g1175 729 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 258 286 IPR014014 GO:0003724
Apr2g1175 729 Coils Coil 40 65 - -
Apr2g1175 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 632 IPR027417 -
Apr2g1175 729 SMART helicmild6 532 613 IPR001650 -
Apr2g1175 729 SMART ultradead3 277 490 IPR014001 -
Apr2g1175 729 Pfam Helicase conserved C-terminal domain 509 612 IPR001650 -
Apr2g1175 729 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 27 117 - -
Apr2g1175 729 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 238 728 - -
Apr2g1175 729 Gene3D - 484 708 IPR027417 -
Apr2g1175 729 Gene3D - 220 475 IPR027417 -
Apr2g1175 729 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 289 474 IPR014001 -
Apr2g1175 729 Pfam DEAD/DEAH box helicase 282 462 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1175 Apr-Chr2 17995746 17999539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1175 258 639 Eukaryotic Initiation Factors Gene Family AT3G19760 28.283 3.07e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1175 - - gmx:100808520 1117.06