Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1171 ATGCCTCAGGGAAGCCTTGAAGTTCTTCTTGTTAGCGCCAAGGGCCTTGAGAATACTGATTTTCTTAGTAACATGGACCCTTATGTGATCCTCACATGCCGCACTCAGAAGCAACAAAGCAGCGTTGCATCAGGTAAAGGGAGTGATCCAGAATGGAATGAGAATTTTGTATTCAACGTGTCTGAAGGGGTTTCCGAACTAAACTTGAAGATCATGGACAGTGACACCTTAACGGCTGATGATTTTGTAGGAGAAGCCACCATTCCACTAGTCGCATTGTTTTCGGAAGGAAGTCTTCCACCCACCTCATACAATGTTGTGAAGGATGGCCACTATTGTGGAGAGATTAGAATTGGCCTCAGTTTTACGCGTCAGGATCGCAGAGAACTGCCGGAGGAAAGTTTTGGTGGATGGAAAGAGTCTGGTTACCGAAACTGA 438 0.4589 MPQGSLEVLLVSAKGLENTDFLSNMDPYVILTCRTQKQQSSVASGKGSDPEWNENFVFNVSEGVSELNLKIMDSDTLTADDFVGEATIPLVALFSEGSLPPTSYNVVKDGHYCGEIRIGLSFTRQDRRELPEESFGGWKESGYRN* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1171 145 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Apr2g1171 145 PANTHER OS02G0640000 PROTEIN 1 141 - -
Apr2g1171 145 Pfam C2 domain 4 96 IPR000008 -
Apr2g1171 145 SMART C2_3c 5 102 IPR000008 -
Apr2g1171 145 Gene3D C2 domain 2 124 IPR035892 -
Apr2g1171 145 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 123 IPR035892 -
Apr2g1171 145 PANTHER C2 DOMAIN-CONTAINING 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1171 Apr-Chr2 17967591 17969410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1171 4 126 C2H2 Transcription Factor Family AT4G21160 32.520 1.59e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1171 - - gmx:100806391 242.276