Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1164 ATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTGACTGAAGTGGATCAGGCAAACGTACCCAACATGGAAATAATGGATGGTTCAAGCAGATATGGAGTTTACAGAAGCAAAGGGGAATTTTCTGTTGACTTGAAGCTTGGCCAAGTGGGAATTTCTGGCACAGAAACAAAGTCCAAAGATGCTGGTGGAGTCTCCAAAGTGGCACCCTCATCTTCAGGGTCATCTAAGAGAGCTCGAGCCATTAACAATGGGACACAGACAGTGTCATGCCTTGTGGATGGATGCCATTCTGATCTTAGTAATTGTAGGGACTATCATAGACGCCATAAGGTCTGTGAAATCCATTCCAAGACTGCACAAGTCACAATTGGAGGCCAGAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAAGGGAAAAGGAGCTGCAGGAAACGCTTAGATGGGCATAACCGACGGAGAAGAAAGCCCCAACCAGAACCTCTAACGCGTTCTGGTAGTTTTTTGTCGAATTACCAAGGCACCCAGTTGCTACCCTTCACTAGTTCACATGTGTACCCGTCCACTACTGTGGTGAATCCTGCTTGGGGTGGAGTTGTAACATCTGGTGGGGATGTTAGGCTTCAGAACCAACAAAACCAACAAGTGCATTTGGTTGATAAACAAGATCTTTTTCTTGGCTCTTCTCCAACCGGTTATAAAGAAGGGAAGCAAGTGGCGTTCATGCAAGGTGACCATACTCTCAACAACCAAAGCCCGCATCTTCCAACTGCTCCCGTGGGCCAGGCCCAGACGTTTCTCAGGACCAGCCCGTTTTCTGAAAGCAGTGGGCTGAGATGCAAAATGTTCTGCGATAGCCTAACGAGTTCAGTCCACGACTCCTCCTCTTGTGCTCTCTCTCTTCTGTCATCACCGCCGACGCACAATCCTGGCAACGGATTAAACCAAATGATGAACGCTCACTCACCCCTTATGCACCAACCCTTGGGCCTGAGCCTGCACGACAACAGCTTGGGACCCGTGGACCCGGTTATGGGCCCCAACGGGAGCGACCATTCTTCATCAATGTATAACTTAGGTTCTAATGGATCACAAGGGAATGAAGCCCCGCCACTGTTTCCCTTTCAATGGGAATAG 1161 0.4858 MDWNLKAPSWDLTEVDQANVPNMEIMDGSSRYGVYRSKGEFSVDLKLGQVGISGTETKSKDAGGVSKVAPSSSGSSKRARAINNGTQTVSCLVDGCHSDLSNCRDYHRRHKVCEIHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGTQLLPFTSSHVYPSTTVVNPAWGGVVTSGGDVRLQNQQNQQVHLVDKQDLFLGSSPTGYKEGKQVAFMQGDHTLNNQSPHLPTAPVGQAQTFLRTSPFSESSGLRCKMFCDSLTSSVHDSSSCALSLLSSPPTHNPGNGLNQMMNAHSPLMHQPLGLSLHDNSLGPVDPVMGPNGSDHSSSMYNLGSNGSQGNEAPPLFPFQWE* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1164 386 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 5 386 - -
Apr2g1164 386 MobiDBLite consensus disorder prediction 154 176 - -
Apr2g1164 386 Pfam SBP domain 91 164 IPR004333 GO:0003677
Apr2g1164 386 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 386 IPR044817 GO:0003677
Apr2g1164 386 ProSiteProfiles Zinc finger SBP-type profile. 88 165 IPR004333 GO:0003677
Apr2g1164 386 MobiDBLite consensus disorder prediction 56 80 - -
Apr2g1164 386 Gene3D - 82 152 IPR036893 GO:0003677|GO:0005634
Apr2g1164 386 SUPERFAMILY SBT domain 89 170 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1164 Apr-Chr2 17891477 17894053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1164 1 386 SBP-box Gene Family AT5G50670 42.469 4.17e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Apr2g1164 SBP 3.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1164 - - gmx:100805328 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1164 2 17891477 17894053 Apr1g0307 1 3611215 3615000 PCT