Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1144 ATGGAAAAGTTGAATTTTGTTAAAAATGGAGTAAGCAAATTGCCTCCTGGGTTTCGTTTCCAGCCAACAGATGAAGAGGTTGTCTTTCAATACTTGAAATGTAAAGTCTTCTCATACCCCTTGCCTGCTTCTATCATTCCTGAGATCAATGTCTCCAAGTATGACCCATGGGATATACCAGGGAATTGTGATGAGCAAGAGAGGTACTTTTTTAGCTCCAAGGAAGCTAAGTATCGAAATGGCAATCGTATGAACCGATCAACCAAGTGTGGATATTGGAAGGCAACAGGATCAGACAAAAAAATAACATCTTCAATGTGTAATGGTATTGTGGGTATAAGAAAAACCCTTATTTTTTATGAAGGGAAATCTCCAAGAGGATCCAGAACTGGTTGGGTCTTACACGAATATCGCCTCGTCGGTGTAGAAACTAGTGCTTGCAATTCATCACAGAACTACATAAACGAGATTGGAGATTGGGTTTTGTGTCGCTTATTGATGAAGAAAAGAAGTATAGAAAGTGATGTCAGCACCACTCATCACAAGCATAGGCATAATATAGTTCAAGCTAGTCCAAGATTGTTTGATTTTATGATGGTTGGCAAGACCCATTCTTCTACATCCTCATCATGTTCAAGTTCCAGTAACATCATGGAGGTCTCTTCAAATGCTGACCATGAAGAAACAAGTGGCTATGCTGATTTTTAG 708 0.3927 MEKLNFVKNGVSKLPPGFRFQPTDEEVVFQYLKCKVFSYPLPASIIPEINVSKYDPWDIPGNCDEQERYFFSSKEAKYRNGNRMNRSTKCGYWKATGSDKKITSSMCNGIVGIRKTLIFYEGKSPRGSRTGWVLHEYRLVGVETSACNSSQNYINEIGDWVLCRLLMKKRSIESDVSTTHHKHRHNIVQASPRLFDFMMVGKTHSSTSSSCSSSSNIMEVSSNADHEETSGYADF* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1144 235 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Apr2g1144 235 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 235 - -
Apr2g1144 235 MobiDBLite consensus disorder prediction 208 228 - -
Apr2g1144 235 Gene3D NAC domain 23 173 IPR036093 GO:0003677|GO:0006355
Apr2g1144 235 MobiDBLite consensus disorder prediction 208 235 - -
Apr2g1144 235 ProSiteProfiles NAC domain profile. 14 168 IPR003441 GO:0003677|GO:0006355
Apr2g1144 235 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 235 - -
Apr2g1144 235 SUPERFAMILY NAC domain 10 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1144 Apr-Chr2 17699982 17701408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1144 1 171 NAC Transcription Factor Family AT5G13180 60.819 6.94e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr2g1144 NAM 6.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1144 - - gmx:100812015 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0326 1 3924418 3925850 Apr2g1144 2 17699982 17701408 ECH
Apr4g1577 4 17406467 17407863 Apr2g1144 2 17699982 17701408 ECH
Apr4g2807 4 36595722 36624920 Apr2g1144 2 17699982 17701408 ECH
Apr2g1144 2 17699982 17701408 Apr2g1144 2 17699982 17701408 ECH