Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1130 ATGATGTCTAAATTAGCAAACGGGGTTGCTTTGGCTCAAGACACAGAAGAACAAGACTCTGCTTCCGTTTCATGGACAAACTCAAATGCCAACATCAACACCGACGAATTGAGCCGTGTATTTGTATCATCACTCTGTGCTTATAAACCCATCATCTCTGGAATCAATGAAGAATGCTACGTGGCCAACAACACTACCCAAAACCAAAACAACCCTGATATAACAAAGGACATGGTCTTCTCACAAAACTTTGGTGACAATCCATTGCTCCAATCATTGGACACTTCCTCATCCACTGTGTTCACCCACCTCGACTCATCTCAGGTGCACAACTTCCTTACTCCAAACCCCATCTTTTCTTCTCTTCTCAGTGCCATCAACAACCCTTTAGAACATGGCTTTGACATGGGTTCTGAGGTGGGTTTTCTTGACCCTCAAGTTTCCTTTACTTCGAAAGTGTTGAACAAAGGTGATAATGCCTTCTTGGGTGGTGGCTTCATCACAGACTTCACCTCAAATAATAATAACCTTTTAGACTCACACCCCAACTTAGAAACTACGTGTATAATGTCCCAAGTGACACAAGTTGGTTTTTCGGGTCTTAAGAATAATAATAATAATAATAATAATTTTGATCACGAGGAGGGTTCTAGAAAGGCCTTGCTTCTGAACAAGTCCAACATATTGAAACCCCTTGAGTCCTTGCCTCCATCAGGTGCACAACCAACTCTTTTTCAGAAGAGAGCAGCACTTTGGAAAAACGTGACAGGTAATTACAAGGGCAGGTGTGAACTTGTTGGTGAAGGGAATGATGATAAGAAGAGGAAAACATGTAATGGAGAAGATGTTGAGGTTGAGGTTGAAGTTGAAGATGGGAGTTTTGATGGGTCAGGGTTGAATTATGATTCTGATGAGATGATTGAGAGTGATAACAATAAGACGGAAGAGAATGGTAAGGATGGTGGAAATAGTTCAAATGCCAACAGTACCATCACTGGTGTGGATCAGAAAGGGAAGAAGAAGAAGGGTGTACCTGCTAAGAATTTGATGGCTGAACGCCGCCGAAGGAAGAAGCTCAATGATAGACTCTATATGTTAAGATCCGTTGTCCCCAATATTAGCAAAATGGACAGGGCTTCAATTCTGGGGGATGCAATCGAGTATTTGAAGGAACTTTTACAAAGGATTAGTGACCTTCACAATGAATTGGAGTCAACACCAGCTGGCTCTGCATTGACACCCACTCTACCAACACTACCATGCCGTATTCAAGAAGAACTTTGCCTCAGCTCATTGCCAAGCCCTAATGGCCAACCTGCCAGGGTTGAGGTTCGGTTGAGCGAAGGAAGAGGTGTAAACATCCACATGTTTTGCGGGCGCAAACCGGGTCTCTTGCTGTCAACTATGAGGGCTCTGGACGACCTTGGTTTAGACATCCACCAGGCAGTTATAAGCTATTTCAATGGATTTGCTATGGATATTTTCCGAGCTGAGCAATGCAAGGAAGGTGAGGATGTCCATCTGGAGCAAATCAAAGCAGTACTAATGGATTCAGCTGGGTTCCACGGCATGACCTAG 1578 0.4354 MMSKLANGVALAQDTEEQDSASVSWTNSNANINTDELSRVFVSSLCAYKPIISGINEECYVANNTTQNQNNPDITKDMVFSQNFGDNPLLQSLDTSSSTVFTHLDSSQVHNFLTPNPIFSSLLSAINNPLEHGFDMGSEVGFLDPQVSFTSKVLNKGDNAFLGGGFITDFTSNNNNLLDSHPNLETTCIMSQVTQVGFSGLKNNNNNNNNFDHEEGSRKALLLNKSNILKPLESLPPSGAQPTLFQKRAALWKNVTGNYKGRCELVGEGNDDKKRKTCNGEDVEVEVEVEDGSFDGSGLNYDSDEMIESDNNKTEENGKDGGNSSNANSTITGVDQKGKKKKGVPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAIEYLKELLQRISDLHNELESTPAGSALTPTLPTLPCRIQEELCLSSLPSPNGQPARVEVRLSEGRGVNIHMFCGRKPGLLLSTMRALDDLGLDIHQAVISYFNGFAMDIFRAEQCKEGEDVHLEQIKAVLMDSAGFHGMT* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1130 525 Pfam Helix-loop-helix DNA-binding domain 350 392 IPR011598 GO:0046983
Apr2g1130 525 CDD ACT_UUR-ACR-like 454 518 - -
Apr2g1130 525 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 392 IPR011598 GO:0046983
Apr2g1130 525 CDD bHLH_AtAMS_like 346 418 - -
Apr2g1130 525 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 89 524 - -
Apr2g1130 525 MobiDBLite consensus disorder prediction 1 23 - -
Apr2g1130 525 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 412 IPR036638 GO:0046983
Apr2g1130 525 MobiDBLite consensus disorder prediction 318 334 - -
Apr2g1130 525 SUPERFAMILY ACT-like 451 524 IPR045865 -
Apr2g1130 525 SMART finulus 349 398 IPR011598 GO:0046983
Apr2g1130 525 MobiDBLite consensus disorder prediction 292 345 - -
Apr2g1130 525 Gene3D - 335 407 IPR036638 GO:0046983
Apr2g1130 525 PANTHER BHLH TRANSCRIPTIONAL FACTOR 89 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1130 Apr-Chr2 17565435 17569397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1130 48 498 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 47.257 3.40e-105 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr2g1130 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1130 - - lang:109358267 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0339 1 4114193 4117834 Apr2g1130 2 17565435 17569397 ECH
Apr2g1130 2 17565435 17569397 Apr2g1130 2 17565435 17569397 ECH
Apr2g1130 2 17565435 17569397 Apr1g0339 1 4114193 4117834 PCT