Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1129 ATGGCGTCATCAGATGTTTCAATCAAGGGAAATTCCGTTAACGGAAAAGGAGAAAACAACGATGCTAGAAATAGTGCAGGAGAGTGTCAACATGCTTCTTCTTCGTCATCCACAAGAGACGCGGAAGCTGCCCTTTACAGGGAGCTGTGGCATGCGTGTGCGGGTCCTCTCGTCACAGTGCCTAGAGAAGGAGAGCGCGTGTTCTATTTTCCTCAAGGACATATTGAGCAGGTAAGTGCTAATCGTGTTTTTGTAGCCACCGGGATGAGATTTTCTTCGCCGGAGGTGGAAGCGTCGACAAATCAGGTAGCGGAACAGCATATGCCGGTGTACGATCTCCCACCTAAGATCCTTTGTCGGGTTATCAACGTGATGCTCAAGGCGGAGCCAGACACGGATGAGGTGTTTGCTCAGGTGACCTTAGTTCCTGAGTCAAATCAAAATGAGAATGCGGTGGAGAAAGAGGCTCCTCCGACTCCGCCTCCAAGATTCCACGTGCATTCCTTCTGTAAAACGCTGACGGCGTCAGATACAAGCACTCATGGTGGGTTTTCCGTGCTGAGAAGACACGCTGATGAATGCCTTCCTCCGCTGGATATGTCAAAGCAGCCACCTACTCAGGAATTGGTCGCTAAGGATCTGCATGGGAATGAGTGGCGATTCAGGCATATCTTTCGTGGTCAACCGCGTAGACATTTGCTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTTGTCGCCGGAGATGCGTTTATATTTTTAAGGGGTGAGAACGGGGAGCTTCGTGTTGGGGTTAGGCGTGCAATGAGACAGCAGGGTAATGTTCCATCATCTGTTATCTCTAGCCATAGCATGCATCTAGGTGTCCTTGCAACTGCCTGGCATGCCATACGGACCGGGACCATGTTCACTGTATATTACAAGCCTAGGACTAGTCCGGCTGAATTCATTGTTCCATATGATCAATACATGGAGTCTCTTAAAAGCAATTACACCATTGGGATGAGGTTTAAGATGAGATTCGAAGGTGAAGAGGCTCCAGAGCAAAGGTTTACTGGTACCATTGTTGGAATCGAAGATGCTGACCCTCAAAGGTGGCCAAAATCCAAATGGAGAAGTCTTAAGGTGAGATGGGATGAAACATCTAACATACCTCGTCCTGAAAGAGTTTCCCAATGGAAAATAGAGCCTGCTCATGCTCCACCGGCTCTAAATCCTCTACCAATGCCCAGGGCTAAAAGACCTCGATCTAATGCAGTTCCATCATCCCCAGATTCGTCTGTTCTTACCAGAGAAGCATCTTCTAAAGTAAGTATAGACCCTTTGCCAGCAAGTGGGTTTCAAAGGGTCTTGCAAGGTCAAGAATTATCGACCTTGAGAGGTAATTTTGCTGAAAGCAACGAATCTGATACTGCAGAGAAGTCTGTTGCGTGGCCACCTGTTGCAGATGACGAAAAGATTGATGTTGTTTCTACTTCAAGAAGGTATGCATCAGAGGGCTGGATGTCAATGGGAAGACACGAGCCAGCATATCCAGATCTGCTTTCAGGCTTTGGGTCCCACGGAGATCTTTCATCCCATCCATCGTATGTTGATCAAACTGGTCCTGTAGCTAACCCTGGTAGGAAACATCTGTTGGATCGTGAAGGAAAACATAATGTTATCAATCCATGGTCTGTAATGCCCTCTAATCTATCGCTCAGTCTCTTGGACTCTAATATAAAAGGTTCTGCTCAAGCCAGTGATACAACTTACCAAGTTCGAGGGAATATAAGGTATAATAGTGCCTTTGGTGACTACCCTGTTCTTCATGGACATAAAGTTGAGCATCCACACGGAAACTTGTTGATGCCACCACCAACTTCAACTCAGTTTGAAAGTCCTCATTCAAGAGAACTGTTGCCCAAACCAGTATCAGGAAAACCTTCTGAGGTTGCGAGGCATAAAGATGGTGATTGTAAGCTGTTTGGCATCTCACTTCTCAGTAGCCCCATTGCACCAGAGCCTTCTGTTTCACAAAGGAATGTTGCAAGTGAGCAGCCAGTTGGCCACGTGCATTGTTCATCACACCAACAGCGCAAATTTGAAAATGTTCAGAAGTCTGAGCATTCGAGGGGATCAAAACTGTCTGATGGTCTGCTGACTGATGACCATGAAAAGCTGCTGCAAACTTCGCAGCCGCATTTAAATGATGTTCAATCCAAGCCTCATGGTGGCTCTGCTAGAAGTTGCACTAAAGTTCACAAGAAGGGGATTGCACTTGGTAGGTCCGTGGACCTTACAAAGTTCAGTAATTATGATGAATTAATTGCTGAATTGGATCAGCTGTTTGATTTTGGGGGTGAATTATCTTCTCCACAAAAGGACTGGCTTATTGTCTACACTGACAATGAGGGTGATATGATGCTTGTTGGTGATGATCCGTGGCAGGAGTTTGTTGCAATGGTCCGCAAAATCTATATCTACCCCAAAGAGGAGATTCAGAAAATGAGCCCCGGTACCTTAAGTTCAAGAAATGAAGAGTCAGCTAGTGAAGGGGCTGATGCACAAGAAATTAAATGTCAGCTCAATCATTCAGCTTCAGATACCTGA 2598 0.4623 MASSDVSIKGNSVNGKGENNDARNSAGECQHASSSSSTRDAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVSANRVFVATGMRFSSPEVEASTNQVAEQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLVPESNQNENAVEKEAPPTPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAIRTGTMFTVYYKPRTSPAEFIVPYDQYMESLKSNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWPKSKWRSLKVRWDETSNIPRPERVSQWKIEPAHAPPALNPLPMPRAKRPRSNAVPSSPDSSVLTREASSKVSIDPLPASGFQRVLQGQELSTLRGNFAESNESDTAEKSVAWPPVADDEKIDVVSTSRRYASEGWMSMGRHEPAYPDLLSGFGSHGDLSSHPSYVDQTGPVANPGRKHLLDREGKHNVINPWSVMPSNLSLSLLDSNIKGSAQASDTTYQVRGNIRYNSAFGDYPVLHGHKVEHPHGNLLMPPPTSTQFESPHSRELLPKPVSGKPSEVARHKDGDCKLFGISLLSSPIAPEPSVSQRNVASEQPVGHVHCSSHQQRKFENVQKSEHSRGSKLSDGLLTDDHEKLLQTSQPHLNDVQSKPHGGSARSCTKVHKKGIALGRSVDLTKFSNYDELIAELDQLFDFGGELSSPQKDWLIVYTDNEGDMMLVGDDPWQEFVAMVRKIYIYPKEEIQKMSPGTLSSRNEESASEGADAQEIKCQLNHSASDT* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1129 865 PANTHER AUXIN RESPONSE FACTOR 2 30 850 - -
Apr2g1129 865 SUPERFAMILY DNA-binding pseudobarrel domain 165 298 IPR015300 -
Apr2g1129 865 MobiDBLite consensus disorder prediction 832 865 - -
Apr2g1129 865 CDD B3_DNA 167 269 IPR003340 GO:0003677
Apr2g1129 865 ProSiteProfiles PB1 domain profile. 744 826 IPR000270 GO:0005515
Apr2g1129 865 Pfam B3 DNA binding domain 169 270 IPR003340 GO:0003677
Apr2g1129 865 MobiDBLite consensus disorder prediction 670 714 - -
Apr2g1129 865 MobiDBLite consensus disorder prediction 624 650 - -
Apr2g1129 865 Pfam AUX/IAA family 735 832 IPR033389 -
Apr2g1129 865 Pfam Auxin response factor 295 377 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr2g1129 865 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 850 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr2g1129 865 MobiDBLite consensus disorder prediction 691 714 - -
Apr2g1129 865 Gene3D - 166 271 IPR015300 -
Apr2g1129 865 MobiDBLite consensus disorder prediction 670 689 - -
Apr2g1129 865 MobiDBLite consensus disorder prediction 1 36 - -
Apr2g1129 865 Gene3D - 332 403 - -
Apr2g1129 865 MobiDBLite consensus disorder prediction 391 443 - -
Apr2g1129 865 SUPERFAMILY CAD & PB1 domains 746 821 - -
Apr2g1129 865 MobiDBLite consensus disorder prediction 421 436 - -
Apr2g1129 865 Gene3D - 740 833 - -
Apr2g1129 865 ProSiteProfiles B3 DNA-binding domain profile. 169 271 IPR003340 GO:0003677
Apr2g1129 865 SMART B3_2 169 271 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1129 Apr-Chr2 17559730 17565164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1129 1 863 B3 DNA Binding Superfamily AT5G62000 63.300 0.0 1082
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr2g1129 AUX_IAA 3.7e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1129 - - gmx:100815956 1489.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1129 2 17559730 17565164 Apr2g1129 2 17559730 17565164 ECH
Apr2g1129 2 17559730 17565164 Apr1g0340 1 4117773 4123706 PCT