Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1128 ATGCGATTCGCAAATCTCGATGACACTCCAATGTTCCGCCAACAGCTCCAGTGCTTGGAGGAAAGTGCAGAATCATTGCGCGCTAGATGCTGCAAATTCTACAAAGGATGCCGAAAGTACACGGAAGGGCTTGGAGAGGCATATGATGGAGACATTGCTTTCGCAAGTGCCATAGAAAATTTTGGAGGAGGGCATAGCGATCCTAATTTTGTTGCTTTGGGAGGACCTGTTATGACCAAATTTACTATTGCTTTGAGAGAAATCAGTACATACAAGGAACTTCTTCGGTCACAAGTAGAACACATGCTCAATGGTCGGTTACTACCCATTGTCAATGTTGACATCCATGAAGTCAAGGAAGCTCGTAAGCGTTTTGATAAAGCTGCCCTTGTATATGACCAGGCACGTGAGAAGTTCATGTCACTGAGAAAAAGCACTAAGATTGATATTGCCACTGTCATAGAAGAGGAATTGCAAGATGCAAGAGCATCGTTTGAGGAGGCCCGTTTCAATCTGGTCGGTGCTCTTAATAATATTGAGGTCAAGAAGAGATTTGAATTTTTAGAGGCTGTCGCTGGGATTATGGACGGTCATCTCCGATACTTTCAACAGGGGTATCAGCTATTACATCAGATGGAGCCTTTCATTAGCGAGGTTATGGATTATGCACATCAATCTAGAGAAAGTTACAATAAGGAGCAGATTGCACTGTATAAAAGAATGCAAGACTACAAAAGACAAGTTTATCAAGAAAGTAGATTGTCCTTAAATGGCCCTTACGGTTCTCCTAGTGGAGACTCTGCGCATCCGTTTTCTAGGATATCAAATGAAGTGGTAGATGTAGTAATGGAATCTGCTGCCAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCAAAACGATCGTCCAATTTGAGAGGTGACTGGAAAAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGTTGTACTATTACCGCAAACCATGGAACGCATCACATGGCAGCAATCAACCATCTCCAAAAAGGAATAATGGTGGTGAAAATGGTTCTGGACTTCTTAGTCGATGGCTTTCTTCTCATTACCATGGGGGTGTCCATGATGAAAAATCTATAGCACGTCATACAGTAAACTTGCTGACATCAACAATCAAGGTTGATGCCGATCAGTCAGATTTAAGATTCTGCTTCAGGATTATTTCACCATCAAAAAACTATACGTTGCAGGCAGAAAATGCATTGGACCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTGTTGAGTGTCCAGACACTGGGATCACCTCAATCAGAGAACTGTGATTCTTACAACGACAAAATCGATAAGTTGAAAAGTTCTCCAGATGATGATTGCTCAGTAACTACGAAACCTGCATCCAAGAATTCTACCCCTAACAATCACTTACGTGCATCTAGAAGTTTGCATTTGCATAGACACAATATAAAAGGTGAAAAGCCAATTGATGTTCTTAGAAGGGTGAGCGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCTTCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCTGGTGTTCACCGTAATCTTGGAGTACATATATCAAAAGTAAGATCACTGACACTTGATGTCAAAGTCTGGGATCCCTCTGTTTTAAGTATGTTCAAGTCACTAGGCAATCTTTTTGCAAACTCAGTTTGGGAAGAGCTGTTGAATTCAACAAGTACCTTGCAAATTGTTGATGCCCCTGCTGATTTGTCCAAGGAGAACAGAGATGAGCTATTTCATGCAAGAAAACCAAAACATGACGATGCTATTTCATTAAAGGAGAGGTTCATTCACGCAAAGTATTCCGAGAAAAAATTTATTCGCCACACAGAGAAAAACCACCCTCTCCTTTCACTGGCACAACAGGTACGGGAAAGCATCTGTGCCAATGACAAGAAAGCAGTGTACCAGCATATTGTCATGTCGGATGTGGATCTCAATGCCATCAGTCGGCAAGCATTGTCTGGTGACTCTTTAAACATGGCTTCTTCAAGTAATTTAAACATTTCATCTCAAAGTGGAAATCAGCTCATTGAGGACATACAAAATGGCTCTAGCGTGCTTCACCTGGCGTGCCTAACTGGTGACATTGGCATGATGGAGCTGCTCCTACAGCATGGGGTAGATATAAATGCTTGTGATTCAAGAGGCCAGACACCACTACATTATTGTATTATTAGAGGGAAGACCGCAGCTGCTAATGTGCTTATCATGCGGGGGGCCAATATACATGTCGCAGATAAAGAAGGCAACACTCCTCTTAAGCTCGCATCAGAATCTGGCCGTGTTGACAACGAAATTCTCACTATTTTGGCAAGCAGATTACATTCCCAAAGCGTTGCTATAAGCAGTCAATAA 2436 0.4183 MRFANLDDTPMFRQQLQCLEESAESLRARCCKFYKGCRKYTEGLGEAYDGDIAFASAIENFGGGHSDPNFVALGGPVMTKFTIALREISTYKELLRSQVEHMLNGRLLPIVNVDIHEVKEARKRFDKAALVYDQAREKFMSLRKSTKIDIATVIEEELQDARASFEEARFNLVGALNNIEVKKRFEFLEAVAGIMDGHLRYFQQGYQLLHQMEPFISEVMDYAHQSRESYNKEQIALYKRMQDYKRQVYQESRLSLNGPYGSPSGDSAHPFSRISNEVVDVVMESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYYRKPWNASHGSNQPSPKRNNGGENGSGLLSRWLSSHYHGGVHDEKSIARHTVNLLTSTIKVDADQSDLRFCFRIISPSKNYTLQAENALDQMDWMEKINGVIASLLSVQTLGSPQSENCDSYNDKIDKLKSSPDDDCSVTTKPASKNSTPNNHLRASRSLHLHRHNIKGEKPIDVLRRVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDPSVLSMFKSLGNLFANSVWEELLNSTSTLQIVDAPADLSKENRDELFHARKPKHDDAISLKERFIHAKYSEKKFIRHTEKNHPLLSLAQQVRESICANDKKAVYQHIVMSDVDLNAISRQALSGDSLNMASSSNLNISSQSGNQLIEDIQNGSSVLHLACLTGDIGMMELLLQHGVDINACDSRGQTPLHYCIIRGKTAAANVLIMRGANIHVADKEGNTPLKLASESGRVDNEILTILASRLHSQSVAISSQ* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1128 811 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 800 - -
Apr2g1128 811 CDD BAR_SFC_plant 15 215 IPR035670 -
Apr2g1128 811 SUPERFAMILY ArfGap/RecO-like zinc finger 496 634 IPR037278 -
Apr2g1128 811 PRINTS HIV Rev interacting protein signature 507 526 IPR001164 GO:0005096
Apr2g1128 811 PRINTS HIV Rev interacting protein signature 526 543 IPR001164 GO:0005096
Apr2g1128 811 PRINTS HIV Rev interacting protein signature 549 570 IPR001164 GO:0005096
Apr2g1128 811 SUPERFAMILY PH domain-like 203 427 - -
Apr2g1128 811 SMART arf_gap_3 495 641 IPR001164 GO:0005096
Apr2g1128 811 Pfam PH domain 294 427 IPR001849 -
Apr2g1128 811 MobiDBLite consensus disorder prediction 457 478 - -
Apr2g1128 811 CDD PH_ACAP 295 432 - -
Apr2g1128 811 Pfam BAR domain of APPL family 6 232 - -
Apr2g1128 811 Gene3D - 285 438 IPR011993 -
Apr2g1128 811 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Apr2g1128 811 ProSiteProfiles Ankyrin repeat profile. 742 774 IPR002110 GO:0005515
Apr2g1128 811 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Apr2g1128 811 ProSiteProfiles Ankyrin repeat region circular profile. 742 774 - -
Apr2g1128 811 CDD ArfGap 498 627 - -
Apr2g1128 811 PANTHER CENTAURIN/ARF 1 800 IPR045258 GO:0005096
Apr2g1128 811 Pfam Ankyrin repeats (3 copies) 714 798 IPR002110 GO:0005515
Apr2g1128 811 Pfam Putative GTPase activating protein for Arf 498 634 IPR001164 GO:0005096
Apr2g1128 811 Coils Coil 118 138 - -
Apr2g1128 811 Gene3D - 662 807 IPR036770 -
Apr2g1128 811 ProSiteProfiles Ankyrin repeat profile. 709 741 IPR002110 GO:0005515
Apr2g1128 811 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Apr2g1128 811 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Apr2g1128 811 SUPERFAMILY Ankyrin repeat 686 798 IPR036770 -
Apr2g1128 811 Gene3D Arf GTPase activating protein 476 641 IPR038508 -
Apr2g1128 811 ProSiteProfiles ARF GTPase-activating proteins domain profile. 495 641 IPR001164 GO:0005096
Apr2g1128 811 ProSiteProfiles Ankyrin repeat region circular profile. 709 740 - -
Apr2g1128 811 MobiDBLite consensus disorder prediction 461 478 - -
Apr2g1128 811 SMART ANK_2a 709 738 IPR002110 GO:0005515
Apr2g1128 811 SMART ANK_2a 742 771 IPR002110 GO:0005515
Apr2g1128 811 SMART ANK_2a 775 806 IPR002110 GO:0005515
Apr2g1128 811 SMART PH_update 293 430 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1128 Apr-Chr2 17527888 17541669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1128 494 634 C2H2 Transcription Factor Family AT4G21160 39.437 4.54e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1128 K12489 - gmx:100792517 1313.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0341 1 4149129 4160324 Apr2g1128 2 17527888 17541669 ECH
Apr2g1128 2 17527888 17541669 Apr2g1128 2 17527888 17541669 ECH
Apr2g1128 2 17527888 17541669 Apr1g0341 1 4149129 4160324 PCT