Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1121 ATGCCTTTTCAAATCATGGATCAGAGGGGTGTTTCTGCCTCATCTCACTTTTTTGATGACATCTCCTTTCGTTCTGAGAGGAATGTTGGAATAAGGAAGCCAAAATCCATTAATGAACAATACCCACAAGGGAAGAATGGAATTGTAGCATCACCTGGCAGCATTTTGAATGCTTCATCACCCCTTGATGTAACTGCAAAATCTGGCTTGCTGATGTCACAAACTAGTCTATCTGGGGAGAATATAGATTCCAAGGAATCATCGCATTATCATCCCAAATCATGGTCTGATGGTTTTCTACAGTCAGCACCTACCTCACATGGTTTAATTGGGAGCAAGATTGTCACCAATGCTGCCCCTTGTGAAAGTAGTTTATTCTCAAGCTCACTGTCTGATATATTTAGCCAAAAGTTAAGGTTATTTGGGAATGATGTTCTGTCTGATCAGCCCATTACTGCTGGTTCTCCTCCTGAGGAAGAGCCATATAAATCTCTTGAAGAAATGGAGGCTGAAACTATAGGAAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGGGTTGTTGATGAGTTAGGATGCAGTTCTCATACCAGAGCGAATGATGACTTTGAAGATTTTGATTTGTTTAGCAGTGGTGGAGGCATGGAGCTGGAAGGAGATGAACATTTAAGTTCAGGAAAAAGAATGAGTGGTTTTGATGGAGATTATGGTTTCTTTGGAGGTTCAAAAGGAAAACTTCCTTTTGGTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAGTGTTGAAGACTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGGACCATTTATACAGCCTGTAAGCATCGTGGATTTGTCATGATTTCTTATTATGACCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGAGGTCTAGAAAACTTGATATACATTATTCAATCCCAAAGGTCAATGCTCCAGAGAAAGATATTGGTCATGGTACACTGATGCTATCTGCTCTTGATTCATCTGTTTCAAATGATGAACTTAAAGAGATTTTTGGATTTTATGGAGAAATTAAAGAAATCTACGAATATCAAGAAATGAATCATCACAAATTTATAGAGTTTTATGATGTGCGAGCCGCAGAAGCTGCTCTTCGTGCATTGAACAAGATTGACATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGTTTGATGCAGCAGTCTCATAAGGGGCAAGATGAGCGAGATCTTGGTCAAAGTATTATTGACAACTTATCTTTGAGACAAAAGGCAACTGTGTCTTCTGGACTAATTGGGTCTGGCTGCTTGGAAAATGGATATAATCAGAGGTTTCAATCTGCAACACGGCAACCTTTGAATGCATTTATTGATAATACATTCTTTCATGCAAATTCTGGGATTCACAATGCTGTGAGAGGGGCATCTGCTGGAAAAGTGTCTGGCATTTGCGAGTCCAGTAGCTTTGTTGATGCAATGAAATTTGCATCTAGTCCAAGATTTCACCCTCATTCCTTGCCTGAGTATCGTGACAGTTTAGCTAATGGCAGTCCTTATAACTTCTCTAGCACCATTAGCAACATGGCTAGCAATATAGGTGCTGCAGCCACAGAAGCCTCTGATGGCAGGCATATTCCGGGAATGGGCTCAACTGGGAACTTAGCAGATTTTAGTTCAGGAGGAAATGGGATCCGACCACATCATGGACTCTATCATATGTGGAACAACACCAATTTGCATCAGCAACCTTCATCAAGTACCATGCTTTGGCAGAAAACACCATCATTTGCTAATGGTGCTTGTGCTCCGTGCCTTCCACAGATGTCAAGCTTTGCAAGAACACCACCTCATATGATGAGAACACCACATATTGACCATCATGTCGGATCAGCACCAGTTGTCACAGCGTCACCCTGGGAAAGGCAAAATTCCTACTTGGGAGAGTCCCCTGAGGCTTCTGGTTTTCGCTTGGGTTCTCTTGGAAGTGGAGGTTTTCATGGTTCCTGGCAATTGCATCCACTGGATTTTCCTTCTCACAACATGTTTTCCCACGTTAGTGGAAATGGCACTGAACTGACATCCAATGCCGGACAGAACTCTTCTAAGCAGTTATCACATGTTTTTCCTGGGAGACATCCTATGTCTTCAATGTCAAAATTTGATACTACCAATGAACGAATGAGAAATCTTTATCATCGTAGGAGTGAAGCAAACACCAACAACATTGATAAAAAACAATATGAACTCGACTTAGGTCGCATACTGCGTGGGGAAGACAGCCGAACTACACTTATGATAAAAAATATTCCCAACAAATATACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTAAGGGAACTTATGATTTTCTGTATTTACCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATCATTCCTTTCCACCAGGCTTTCGATGGTAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTAGCCACACTTGCATATGCCCGAATTCAAGGAAAAGCTTCTCTTATTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGTCCTATTCTCTTCCATACAGATGGGCCAAATGCCGGTGATCCGGAGCCTTTCCCTATGGGCGCCAATATTAGATTGCGACCTGGAAAATCTCGCACTTCTGGCAGCGAAGAAAATCGCAGCCAAGGGAGTCCTTCAACTTTGGGAAGTGGAGAGGAGTCTGCTAATGGGATAGATTCTTCAAGAAACTCTGACTGA 2850 0.4144 MPFQIMDQRGVSASSHFFDDISFRSERNVGIRKPKSINEQYPQGKNGIVASPGSILNASSPLDVTAKSGLLMSQTSLSGENIDSKESSHYHPKSWSDGFLQSAPTSHGLIGSKIVTNAAPCESSLFSSSLSDIFSQKLRLFGNDVLSDQPITAGSPPEEEPYKSLEEMEAETIGNLLPDEDDLFSGVVDELGCSSHTRANDDFEDFDLFSSGGGMELEGDEHLSSGKRMSGFDGDYGFFGGSKGKLPFGEQPSRTLFVRNINSSVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSALDSSVSNDELKEIFGFYGEIKEIYEYQEMNHHKFIEFYDVRAAEAALRALNKIDIAGKQIKLEPGHPSLMQQSHKGQDERDLGQSIIDNLSLRQKATVSSGLIGSGCLENGYNQRFQSATRQPLNAFIDNTFFHANSGIHNAVRGASAGKVSGICESSSFVDAMKFASSPRFHPHSLPEYRDSLANGSPYNFSSTISNMASNIGAAATEASDGRHIPGMGSTGNLADFSSGGNGIRPHHGLYHMWNNTNLHQQPSSSTMLWQKTPSFANGACAPCLPQMSSFARTPPHMMRTPHIDHHVGSAPVVTASPWERQNSYLGESPEASGFRLGSLGSGGFHGSWQLHPLDFPSHNMFSHVSGNGTELTSNAGQNSSKQLSHVFPGRHPMSSMSKFDTTNERMRNLYHRRSEANTNNIDKKQYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFDGKKWEKFNSEKVATLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRLRPGKSRTSGSEENRSQGSPSTLGSGEESANGIDSSRNSD* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1121 949 SUPERFAMILY RNA-binding domain, RBD 251 410 IPR035979 GO:0003676
Apr2g1121 949 Gene3D - 248 337 IPR012677 -
Apr2g1121 949 SMART rrm1_1 255 323 IPR000504 GO:0003723
Apr2g1121 949 SMART rrm1_1 340 408 IPR000504 GO:0003723
Apr2g1121 949 SMART rrm1_1 779 855 IPR000504 GO:0003723
Apr2g1121 949 Gene3D - 338 431 IPR012677 -
Apr2g1121 949 Pfam RNA recognition motif 2 777 873 IPR007201 -
Apr2g1121 949 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 412 IPR000504 GO:0003723
Apr2g1121 949 CDD RRM1_MEI2_like 253 328 IPR034453 -
Apr2g1121 949 CDD RRM3_MEI2_like 780 865 IPR034454 -
Apr2g1121 949 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 327 IPR000504 GO:0003723
Apr2g1121 949 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 943 - -
Apr2g1121 949 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 943 - -
Apr2g1121 949 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 342 406 IPR000504 GO:0003723
Apr2g1121 949 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 320 IPR000504 GO:0003723
Apr2g1121 949 MobiDBLite consensus disorder prediction 889 949 - -
Apr2g1121 949 MobiDBLite consensus disorder prediction 919 949 - -
Apr2g1121 949 SUPERFAMILY RNA-binding domain, RBD 779 864 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1121 Apr-Chr2 17479458 17487703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1121 249 422 Eukaryotic Initiation Factors Gene Family AT1G71770 25.758 5.35e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1121 - - gmx:100797893 1672.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1121 2 17479458 17487703 Apr2g1121 2 17479458 17487703 ECH