Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1118 ATGTCTGCTGTGGTATCTGCACTTGTTCAAGTCATTGGTGGCAATCCAGTGCACGAAGATCCAGTAACAGTAGTGTCTCACTCCAGTGTTTTAGGGAATGAACAATCCCAACCAACACAACATCAAGATGAAGGAAACGTTATAAGAAGAAGACACTACAGAGGAGTGAGACAGAGACCATGGGGTAAATGGGCCGCAGAGATTCGAGATCCCAAAAAAGCAGCAAGAGTTTGGCTCGGAACTTTTGACACTGCCGAAGCTGCAGCCATTGCTTATGATGAAGCAGCTTTCAGATTCAGAGGAACCAAAGCTAAACTCAATTTTCCAGAAAGAGTTCAACTTACTGGGCAATTTGCTTTAGCTTCGTCATCTTCGGAACCATCTCAGCCTCAACCAAAAGAAGACCTTCCAACCTTTTCGATGCAATCTAAAGGGTCGTCTTCTACTTCTCAGCCTCCTAAGAGTTGGAACAGTGATTCGGATGCCAAACCATGA 495 0.4485 MSAVVSALVQVIGGNPVHEDPVTVVSHSSVLGNEQSQPTQHQDEGNVIRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDEAAFRFRGTKAKLNFPERVQLTGQFALASSSSEPSQPQPKEDLPTFSMQSKGSSSTSQPPKSWNSDSDAKP* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1118 164 Pfam AP2 domain 52 101 IPR001471 GO:0003700|GO:0006355
Apr2g1118 164 MobiDBLite consensus disorder prediction 119 158 - -
Apr2g1118 164 CDD AP2 52 110 IPR001471 GO:0003700|GO:0006355
Apr2g1118 164 MobiDBLite consensus disorder prediction 119 164 - -
Apr2g1118 164 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Apr2g1118 164 Gene3D AP2/ERF domain 51 111 IPR036955 GO:0003700|GO:0006355
Apr2g1118 164 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Apr2g1118 164 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Apr2g1118 164 SUPERFAMILY DNA-binding domain 52 110 IPR016177 GO:0003677
Apr2g1118 164 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 30 151 - -
Apr2g1118 164 PANTHER DNA-BINDING DOMAIN 30 151 IPR044808 GO:0003700|GO:0009873
Apr2g1118 164 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1118 Apr-Chr2 17448730 17452169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1118 1 148 AP2-EREBP Transcription Factor Family AT5G61890 56.129 2.33e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr2g1118 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1118 - - gmx:100793410 174.866
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1537 4 16659586 16661424 Apr2g1118 2 17448730 17452169 ECH
Apr6g1384 6 20994927 20997090 Apr2g1118 2 17448730 17452169 ECH
Apr2g1118 2 17448730 17452169 Apr2g1118 2 17448730 17452169 ECH