Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1117 ATGGATCAGGACGCATTCACCTCCAACAACCTATTCAAGTGGGACCCACGAACATTTCTTCCAATGGCGCCCTGCACGCGTGTCCCGCTTCTAGAATACTCCATTGCTCCCCCTAGAGCACCGACGGAGCTAGAGGACCTGTTCCGCGCTTACGGCGTCAGATACCACACGGCGGCCAAGGTGGCGGAGCTTGGTTTCACGGTGAGCACACTCGTCAACATGATGGAGGAGGAGCTCGACGACATGATCAACAGCCTTTCACACATTTTTCGCTGGGATCTCCTCTTCGGTGAACGTTACGGCATCAAAGCCGCAGTTAGAGCCCAGCGAAGACGCATCCACGGCGATGACATGCGGCGGCGCAACCTTAACGACGGCACCACCATCAACGCTCTTGATGCTCTTTCTCAAGAAGGGTTGTCGAAGGAGGCAATAGTGGAACAAGAAAAAGAGGTGATAGGGAACAGAGGAGGGAGCGCGTGGGGGGTGGTGAGTGGCGGTGAGAGGAGGAAGCAGCAAAATAGGAGAAGGAGAAGGAGAAGGAAGATGAATGAGCATGATGGTGATCTTGAAGAGGCTGAAGAGGAGGAAGGAGAAGGAGATGATGATGGGGGGAACAATAACAGTGGTTGTGTGAGGCAAAGAGAACACCCATTCATTGTGACCGAGCCTGGGGAAGTTGCACGTGGCAAGAAGAACGGCCTTGATTATCTTTTTCATCTCTATGACCAATGCCGTGACTTCTTGATTCAGGTTCAGAACATTGCCAAAAACCGTGGTGAAAAATGCCCTACCAAGGTGACAAACGAGGTATTTAGGTACGCAAAGAAGGCAGGAGCAAGCTACATTAACAAGCCGAAAATGCGACACTACGTGCATTGTTATGCCTTGCACTGTCTGGATGAGCAAGCGTCGAACGAGTTGAGAAGGGCGTTGAAAGAGAGAGGGGAGAACGTTGGGGCGTGGAGGCAAGCGTGTTATAAACCCCTTGTCGCCATAGCATCGCTTCAAGGTTGGGACATTGATGCCATCTTCAACTCTCATCCTCGTCTTTCCATTTGGTATGTCCCAACTAAACTACGTCAACTTTGTCATGCTCAAAGGAACACCAACGTTGCTCCAAGCTCTCTCTCTGTTGCCACTGCCCACCTTCCTTTCTAA 1161 0.5142 MDQDAFTSNNLFKWDPRTFLPMAPCTRVPLLEYSIAPPRAPTELEDLFRAYGVRYHTAAKVAELGFTVSTLVNMMEEELDDMINSLSHIFRWDLLFGERYGIKAAVRAQRRRIHGDDMRRRNLNDGTTINALDALSQEGLSKEAIVEQEKEVIGNRGGSAWGVVSGGERRKQQNRRRRRRRKMNEHDGDLEEAEEEEGEGDDDGGNNNSGCVRQREHPFIVTEPGEVARGKKNGLDYLFHLYDQCRDFLIQVQNIAKNRGEKCPTKVTNEVFRYAKKAGASYINKPKMRHYVHCYALHCLDEQASNELRRALKERGENVGAWRQACYKPLVAIASLQGWDIDAIFNSHPRLSIWYVPTKLRQLCHAQRNTNVAPSSLSVATAHLPF* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1117 386 Gene3D Protein LEAFY 209 378 IPR038276 -
Apr2g1117 386 PANTHER PROTEIN LEAFY 1 386 IPR002910 GO:0003677|GO:0006355
Apr2g1117 386 Coils Coil 176 196 - -
Apr2g1117 386 Pfam Floricaula / Leafy protein SAM domain 41 115 IPR035079 -
Apr2g1117 386 MobiDBLite consensus disorder prediction 157 212 - -
Apr2g1117 386 MobiDBLite consensus disorder prediction 189 203 - -
Apr2g1117 386 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 207 371 IPR035209 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1117 Apr-Chr2 17442322 17445539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1117 1 369 Orphan Transcription Factor Family AT5G61850 60.305 8.76e-143 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Apr2g1117 C_LFY_FLO 8.4e-105 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1117 - - aprc:113856282 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1117 2 17442322 17445539 Apr2g1117 2 17442322 17445539 ECH