Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1094 ATGGGTAGGAGTCCTTGTTGTGACAAAGAACACACAATCAAAGGTGCTTGGTCCAAAGAGGAAGACCAACGCCTCATCAACTACATCAAGGTTCATGGCGAAGGCTGTTGGAGATCTCTTCCCAAAGAAGCAGGCTTGCTTCGATGTGGCAAAAGCTGCAGACTCAGATGGATTAATTACCTCAGACCTGATCTCAAGAGAGGGAACTTCACCGAAGAAGAAAATGACCAAATCATTCGCCTCCACCGTTTACATGGAAACAAATGGTCTCTGATAGCAGCAAAATTACCTGGAAGAACAGATAATGAGATAAAAAACTATTGGAACACTCACCTCAAGCGCCTACTCCATGTCCGTGGAATAGACCCCACAACCCATAAATCACTCAAGGACACCGCAACTTCCTCTAAAGCCGCTGCCACCACCACAAGTCCAACACCTAATACTCCAGTGCCTGTGGTCAACACCACAAGCCAGAAGAACACTAAAAACAGCAGTATTAACAGTAGCAGCAGCAGCAACAACATTAAGAATAACTACAGTTTTCACTACTTCAATGTTTATCTCAATTCGAAGGTACAGATTATAACTAACTCAGCTGGTGAAGACTCAAATAGTAGCAGTGGTGTTACCACAGAGGAACCTTATCCTCAACTCAGCCTGGAGCTTTCCTTAGCCCCACCCTCTGATCAGCCCCAAGTTTCTGATTCTATGAATTCAGATATGCTAAAACCACAAGAGCAACAAGAACAGCAAGGTAGCCAATGTATGTGCCAGTGTTACAATCTAGGGTTGCAAAGTGACCAAGCTTGTGGCTGCAAAGCCATGGGTTCTGGTGCTGCTATTACAGTTATTTCAACTGTTACTGACAATAACCTGTGTGACTATGAGTGTACCGATTTTATGGGGGCCAAGAATATGAATATTTGA 930 0.4398 MGRSPCCDKEHTIKGAWSKEEDQRLINYIKVHGEGCWRSLPKEAGLLRCGKSCRLRWINYLRPDLKRGNFTEEENDQIIRLHRLHGNKWSLIAAKLPGRTDNEIKNYWNTHLKRLLHVRGIDPTTHKSLKDTATSSKAAATTTSPTPNTPVPVVNTTSQKNTKNSSINSSSSSNNIKNNYSFHYFNVYLNSKVQIITNSAGEDSNSSSGVTTEEPYPQLSLELSLAPPSDQPQVSDSMNSDMLKPQEQQEQQGSQCMCQCYNLGLQSDQACGCKAMGSGAAITVISTVTDNNLCDYECTDFMGAKNMNI* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1094 309 Gene3D - 68 144 - -
Apr2g1094 309 CDD SANT 69 112 IPR001005 -
Apr2g1094 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr2g1094 309 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr2g1094 309 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr2g1094 309 CDD SANT 16 61 IPR001005 -
Apr2g1094 309 PANTHER TRANSCRIPTION FACTOR MYB7 1 267 - -
Apr2g1094 309 Gene3D - 13 66 - -
Apr2g1094 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr2g1094 309 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 267 - -
Apr2g1094 309 MobiDBLite consensus disorder prediction 127 173 - -
Apr2g1094 309 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr2g1094 309 MobiDBLite consensus disorder prediction 224 248 - -
Apr2g1094 309 SMART sant 66 114 IPR001005 -
Apr2g1094 309 SMART sant 13 63 IPR001005 -
Apr2g1094 309 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr2g1094 309 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Apr2g1094 309 MobiDBLite consensus disorder prediction 125 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1094 Apr-Chr2 17278509 17279960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1094 1 309 MYB Transcription Factor Family AT4G38620 43.218 2.13e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr2g1094 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1094 K09422 - gmx:778033 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1094 2 17278509 17279960 Apr2g1094 2 17278509 17279960 ECH
Apr2g1094 2 17278509 17279960 Apr1g0375 1 4705237 4706810 PCT