Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1088 ATGGCCTCTGCTATAGTTCGCAGAAGCATCAGCCACTACTCCGCCAAGCTCCCTTTTGCTTCTTCTTGGTGTTTCAATCACCACCTTCTCTCTTCTCATTCCTCAATCCATATCCATAACCCTCTCTCTCAACAACATGTTCATGTTGTTTCCTCTTTTCATAGCGAAGCTGTTGGTGGTGGTGGACTTCCATCTTATATGCGTGGAGCTGTGTTCTGGGAAGCCAATAAGCCTCTCACCATCGAGGAATTCCAAATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGCCTGTGGAGTATGCCACTCTGATCTGCATGTTATGAAAGGTGAACTTCCATTTTCCAGTCCTTGTGTTGTGGGGCATGAGATTACTGGTGAAGTTGTTGAACACGGACCACTCTCTGATGCCAAAATCATAGAAAGGCTTCCAATTGGATCTCGAGTTGTGGGGGCCTTCATCATGCCTTGTGGCAACTGCTCCTACTGTTCCAAGGGCCATGATGATCTATGTGAGGCTTTCTTTGCCTATAACCGGGCCCAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTCTTCGAAGCAATGGAAAACCAGTATTCATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGCATTGTCTGTATTACCTGCCTCTATGCCATACACCGAATCTGCAATTCTTGGATGTGCCGTTTTTACTGCTTATGGTGCTATGGCTCATGCGGCTAAAGTACGTCCTGGTGATTCTGTAGCTGTTATTGGAACTGGGGGTGTTGGTTCTAGTTGTTTGCAGATAGCTAGAGCATTTGGTGCCTCAGATATAATTGCTGTGGATGTTCAGGATAAAAAACTACAGAAAGCTAAGACATTTGGTGCTACTCACACTATAAATTCAGCAAAGGAAGACCCCATTGAAAAGATAATTGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGAAAACCACAGACATTTGCTCAATGCACACAAAGTGTGAAGGATGGGGGAAAAGCCGTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGCTTGTTCGCAGAAAGATCCAAGTTATTGGCTCATATGGAGGCAGGGCTAGGCAAGATCTTCCAAAGTTAATTAGATTGGCAGAAACAGGTATCTTCAATCTTAGCCATGCTGTCTCTAGAACATATACCTTTGAGGAGGCAGACAAAGCATTTCAAGATCTCAACCAAGGAAGCATTGTTGGTCGAGCTGTGATTGAGATTGTGTGA 1317 0.4518 MASAIVRRSISHYSAKLPFASSWCFNHHLLSSHSSIHIHNPLSQQHVHVVSSFHSEAVGGGGLPSYMRGAVFWEANKPLTIEEFQMPRPKAGEVLIKTKACGVCHSDLHVMKGELPFSSPCVVGHEITGEVVEHGPLSDAKIIERLPIGSRVVGAFIMPCGNCSYCSKGHDDLCEAFFAYNRAQGTLYDGETRLFLRSNGKPVFMYSMGGLAEYCVVPANALSVLPASMPYTESAILGCAVFTAYGAMAHAAKVRPGDSVAVIGTGGVGSSCLQIARAFGASDIIAVDVQDKKLQKAKTFGATHTINSAKEDPIEKIIEITGGKGVDVAVEALGKPQTFAQCTQSVKDGGKAVMIGLAQAGSLGEVDINRLVRRKIQVIGSYGGRARQDLPKLIRLAETGIFNLSHAVSRTYTFEEADKAFQDLNQGSIVGRAVIEIV* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1088 438 Pfam Zinc-binding dehydrogenase 267 398 IPR013149 -
Apr2g1088 438 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 67 437 - -
Apr2g1088 438 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 67 437 - -
Apr2g1088 438 SUPERFAMILY GroES-like 63 270 IPR011032 -
Apr2g1088 438 CDD Zn_ADH10 67 436 - -
Apr2g1088 438 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 124 138 IPR002328 GO:0008270|GO:0016491
Apr2g1088 438 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 229 402 IPR036291 -
Apr2g1088 438 Pfam Alcohol dehydrogenase GroES-like domain 92 222 IPR013154 -
Apr2g1088 438 Gene3D - 71 427 - -
Apr2g1088 438 Gene3D - 244 381 - -
Apr2g1088 438 SMART PKS_ER_names_mod 74 435 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1088 Apr-Chr2 17228312 17232294 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1088 84 359 Monolignol Biosynthesis Gene Families AT4G37970 27.758 1.21e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1088 - - aprc:113855348 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1088 2 17228312 17232294 Apr2g1088 2 17228312 17232294 ECH