Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1087 ATGCCTATTTTAAGTAGAAAGCCTTTTGCCTTGGCTGAGCCTCCTGAGGATTTGAAGCTGGAAGAGCATGTTTATCAAATTCGTTTTACAAAAGAAATATTCCGAGAATATCATGATTATTTGAAACGTTTGAATCTATACCGCCAGAGGATTTGGATGTGTAAAGTCACTAGAAAAAATGGCTTGACTTATGAAGAGGCTTTGGTTTCTGAACAACGTGCCAATGAGAAAGTTCAACAGTTTCCTAAAGAATTAATGACTTCTGCTTTAAGGATTATTCAGTACAGTATGCTCCCTTTGAAGGATCTAGCTGATTCCATTGCTGAAAAGTTGCAGGAATGTTTGTTTGTGGGTGCTGAACTATATGGGAAAAAGGATGATGGAGTATGTCCATGCAAAATATTAAAAGTCATCAAGAAAGGAGTTGGTAAAGTCTGTTATGAGGTAGCCTGGCTCGACAAAAACAAGAATATAAGTGAAAAAGAGGAAGTTCGTGCAGAAGATTTGGTGCAAAAGAAACCACTTCTTAGTAGAAATATTTTGAAGTCTTTTATTCGGGAATCTACATATCGGAATGCCCCTTGGGTTTTACATGATGAACTGGCAAAAAATCATGGAATATCAACTGATGTTCCTGAGGTGTTAAGAGGAAGGTTTTTTTTCAAAGATGGACTTGTAGTTTGCTCCAAGAAAAGGAAAAATGAGGAATCAACGAAGGATACTGATAACTTTAAAAGGAAGAAATTGGATGGTGTGCAAATCAATCATTCTGCCCAAGAAAAAGAAAATGGCCTATACATGGAAGAACCAATCAAATACCCCATTGATGATCTATTGGTGAAGCCTAGTCCAGATGATCCTGTTTTCACTGATCGGCCTTCTCCATCAAGAGACTTTAATGTTCCAATGTGTTGTGTAGGGGATCTTTTAATGGTTTGGGAATTTTGTTCTTCTTTTAGCAAACTGTTGCACCTGTGGCCCTACTCTCTAGAAGATTTTGAAAATGCTATCTGCCATAAGGATAGCAATGTGGTTCTCCTAGTGGAATCTCATGCAGCACTTTTTCGAATTCTCATGAAAGATGACAATGAATACTCTTCAGCTGTAAAGAAACGAAAGTTGAAGTCGAAGATTACATTGATTAATTGGACAGAATATTTATGTGATTTTCTAGAAATGATCAATGTTCCTGAGCTACAGAACTATGAAGCAACTATAAAAAGGGGACATTATGGTCTTGTAGATGCCAATGTGAAATTAGAAATCTTAGGTGAATTGGTCAATCGAGCCCTTGGAACTGCAATTTTCAGGGAAAAGTTGGACGAGTTTATTGAACAGCGGCAGGCACTTGGGGCCACTAGAAGGGAAGAGGCATTGGAAGATGGTAGGAGGAGAAGAGAAAAAAAGGAGAGGTTAAAAGCTGAGTCCAAAAGCAATGGATTTGAGGATGGGCATCTGAACAATGCCAATGTCTTAACAAACAATGATCATGGGATACAAAATGGAGACATGGATAAGAAAAGAAATGTAGAGATAGAATTGTCCAAGCAAAACAATCCATTAGATAGAAGTGGGATCAAGCATTCAAATCCTGCTTCAAAAAAGTCACCCAAGAAGCTGAATTCAGAGCTGAAAGAACCAACAGAAAATGGAAAAGAATTATCCAGAAAGGAATTACTAAAACAGTTGAAGGGTGACAAGGATCCATCAGAGAAGAATAATAAAGAACAGAGGAGAGAATATTTTGAACGAGAGATGGAGAAACGATTTATTCGTAGAAGTCCATTAGGTAAGGACAGAGATTACAATAGGTATTGGTGGTTCCGTCGTGATGGGAGAATATTTGTTGAAAGCTGTGACTTCAAGGAGTGGGGATACTACAGCAGCAAGGAAGAGCTTGATGCATTGATGGGTTCACTGAATTGCAAGGGTGAACGGGAAAGGGCACTGCGAAAGCAACTGGAAAAATATTATAGTAGAATATGCTCAGAACTCCAGAAAAGATCGAAGGACTTGATGCACAAGATTGCAATGGATGAGTCTGTGCTTCGAAGATCTACTCGAGTTCGAGCTCCTCCTAGGCAGAACCCTGCCAATGCTTTCCTCAGATACGTTAACAAGTGGAAAGAAGAGTAG 2136 0.3876 MPILSRKPFALAEPPEDLKLEEHVYQIRFTKEIFREYHDYLKRLNLYRQRIWMCKVTRKNGLTYEEALVSEQRANEKVQQFPKELMTSALRIIQYSMLPLKDLADSIAEKLQECLFVGAELYGKKDDGVCPCKILKVIKKGVGKVCYEVAWLDKNKNISEKEEVRAEDLVQKKPLLSRNILKSFIRESTYRNAPWVLHDELAKNHGISTDVPEVLRGRFFFKDGLVVCSKKRKNEESTKDTDNFKRKKLDGVQINHSAQEKENGLYMEEPIKYPIDDLLVKPSPDDPVFTDRPSPSRDFNVPMCCVGDLLMVWEFCSSFSKLLHLWPYSLEDFENAICHKDSNVVLLVESHAALFRILMKDDNEYSSAVKKRKLKSKITLINWTEYLCDFLEMINVPELQNYEATIKRGHYGLVDANVKLEILGELVNRALGTAIFREKLDEFIEQRQALGATRREEALEDGRRRREKKERLKAESKSNGFEDGHLNNANVLTNNDHGIQNGDMDKKRNVEIELSKQNNPLDRSGIKHSNPASKKSPKKLNSELKEPTENGKELSRKELLKQLKGDKDPSEKNNKEQRREYFEREMEKRFIRRSPLGKDRDYNRYWWFRRDGRIFVESCDFKEWGYYSSKEELDALMGSLNCKGERERALRKQLEKYYSRICSELQKRSKDLMHKIAMDESVLRRSTRVRAPPRQNPANAFLRYVNKWKEE* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1087 711 Coils Coil 455 475 - -
Apr2g1087 711 MobiDBLite consensus disorder prediction 454 480 - -
Apr2g1087 711 ProSiteProfiles DDT domain profile. 303 364 IPR018501 -
Apr2g1087 711 MobiDBLite consensus disorder prediction 481 499 - -
Apr2g1087 711 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Apr2g1087 711 MobiDBLite consensus disorder prediction 561 580 - -
Apr2g1087 711 MobiDBLite consensus disorder prediction 516 556 - -
Apr2g1087 711 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 709 - -
Apr2g1087 711 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 591 657 IPR028941 -
Apr2g1087 711 MobiDBLite consensus disorder prediction 454 503 - -
Apr2g1087 711 Pfam DDT domain 305 361 IPR018501 -
Apr2g1087 711 SMART testlast3 303 364 IPR018501 -
Apr2g1087 711 MobiDBLite consensus disorder prediction 538 556 - -
Apr2g1087 711 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1087 Apr-Chr2 17217392 17224867 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1087 570 656 Homeobox Transcription Factor Family AT1G28420 36.458 6.96e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Apr2g1087 WAC_Acf1_DNA_bd 5.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1087 - - gmx:100789956 1135.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1087 2 17217392 17224867 Apr2g1087 2 17217392 17224867 ECH