Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1080 ATGGGTACTCCTCCGGTGAACACGTTGCCGGTAGCATACCAAGCATGGACAAGTTTGGCAGTACCTGACTGGTTGAACAAAGGTGATAACGCATGGCAAATGGTATCAGCCACCCTTGTGGGGATTCAAAGCATGCCAGGGTTAGTCATCCTCTACGGAAGCATAGTCAAAAAGAAATGGGCAGTTAACTCTGCTTTCATGGCCCTCTACGCATTTGCTGCAGTTGTCCTTTGTTGGGTTACCTGGGCTTATAAGATGTCCTTTGGGGAGAAGCTGTTGCCCTTTTGGGGGAAAGCTGGGCCTGCGTTGGGCCAAAAGTTTCTTATAAAACAAGCGCGGTTGCCGGCAACGCCGCATTATTATGACAACGGTGATCTGGAGACTGCTGATATAGAACCCTTTTATCCCATGGCCACTATGGTGTGGTTTCAGTGTGTTTTTGCTGCCATTGCGCTTGTTATTTTGGCTGGCTCTGTTTTGGCTCGGATGAATTTCAAGGCTTGGATGATGTTTGTGCCTCTTTGGCTCACTTTTTCTTATACCATTGGTGCGTTTAGTTTGTGGGGTGGAGGCTTCTTGTTCCAATGGGGTGTTATGGACTACTCTGGTGGTTATGTCATTCATCTTTCTTCTGGGATTGCTGGCTTCACTGCTGCTTATTGGGTGGGACCAAGATCGAAGAAGGACAGAGAGAGATTTCCACCAAACAATGTGTTACTAACGTTGGCAGGGGCAGGGCTACTATGGTTGGGATGGGCAGGTTTCAATGGAGGAGATCCCTATGCGGCGAACACAGACTCATCCATGGCGGTGCTCAACACAAACGTTTGCGCCGCCACCAGCCTCCTCGTGTGGACGTGGTTGGACGTTATTTTCTTCAAGAAGCCCTCAGTTATTGGAGCCGTTCAGGGCATGATAACTGGCCTTGTTTGCATCACTCCTGGAGCTGGTCTGGTTCAAGGATGGGCTGCAATTGTGATGGGAGTGCTTTCAGGAAGTGTGCCATGGTTCACCATGATGGTGTTGGGGAAGAAATTGACACTGTTTCAAATGGTTGATGACACCCTTGCTGTGTTCCACACTCATGCTGTGGCTGGCCTTCTAGGGGGTGTACTCACTGGCCTATTTGCTGAGCCACGTTTAAGTGCACTCTTTCTACCTGTCACGAACTCCCAAGGAGCAATCTATGGTGGCCCTGGCGGTGTCCAAATCCTTAAACAAATTGTGGGAGGTTTGTTCATCATTGGATGGAACCTCGTGGCCACTTCAATTATTTGTGTGGTTATTGGTTTCATTGTTCCTCTTAGAATGACAGATGAAGAGGTTCTTATTGGGGATGATGCGGTTCATGGTGAAGAAGCTTATGCACTTTGGGGTGATGGAGAAAAACTTAGCATCTACAAAGATGATACAACCCATCATGGAATGGTGTCTAGTGGTCTCACTCAAGTGGTCTAG 1458 0.4829 MGTPPVNTLPVAYQAWTSLAVPDWLNKGDNAWQMVSATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVVLCWVTWAYKMSFGEKLLPFWGKAGPALGQKFLIKQARLPATPHYYDNGDLETADIEPFYPMATMVWFQCVFAAIALVILAGSVLARMNFKAWMMFVPLWLTFSYTIGAFSLWGGGFLFQWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKKDRERFPPNNVLLTLAGAGLLWLGWAGFNGGDPYAANTDSSMAVLNTNVCAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGVLSGSVPWFTMMVLGKKLTLFQMVDDTLAVFHTHAVAGLLGGVLTGLFAEPRLSALFLPVTNSQGAIYGGPGGVQILKQIVGGLFIIGWNLVATSIICVVIGFIVPLRMTDEEVLIGDDAVHGEEAYALWGDGEKLSIYKDDTTHHGMVSSGLTQVV* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1080 485 PANTHER AMMONIUM TRANSPORTER MEP2 17 477 IPR001905 GO:0008519|GO:0016020|GO:0072488
Apr2g1080 485 Gene3D Ammonium transporter AmtB like domains 9 458 IPR029020 -
Apr2g1080 485 ProSitePatterns Ammonium transporters signature. 200 225 IPR018047 GO:0008519|GO:0016020|GO:0072488
Apr2g1080 485 SUPERFAMILY Ammonium transporter 24 437 - -
Apr2g1080 485 Pfam Ammonium Transporter Family 31 455 IPR024041 GO:0008519|GO:0016020|GO:0072488
Apr2g1080 485 TIGRFAM amt: ammonium transporter 29 455 IPR001905 GO:0008519|GO:0016020|GO:0072488
Apr2g1080 485 PANTHER AMMONIUM TRANSPORTER 17 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1080 Apr-Chr2 17148007 17152866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1080 137 474 Inorganic Solute Cotransporters AT2G38290 70.414 5.14e-166 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1080 K03320 - gmx:100785993 916.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1080 2 17148007 17152866 Apr2g1080 2 17148007 17152866 ECH