Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1079 ATGTTTCGCCCAAATTTTAGTGGGGGTCCTCTCAAAATATTGACGAGGTGGCTCATATTCCTTACCATCTTCAAAGTCACTTGTGCTATGAAAGATCCTGATGTAGAAGGTGAAGCTTTGCTTGACTTTTTGAATGTTCTCAATGATTCCAATCACCAAATAAGGGACTGGGATATTTATTTAGTCAGCCCGTGCTTTAGTTGGTCTCATGTCACTTGTAGAAACGGGCATGTGATATCTCTGGCCCTGGCTTCGGTTGGATTTTCTGGAACACTTGCTCCCTCAATTACCAAATTGAAATATTTGGTTAGCTTAGAATTGCAGAACAACAATCTTTCAGGCTCCTTGCCTGATTATATTTCCAACTTGACATACCTACAGTATCTAAATCTTGCTGACAACAACTTCAATGGTTCTATACCAGCTAAATGGGGTCAGCTATCCAGTCTAAAACATCTGGATCTTTCATCCAATGGTCTAACTGGAAGTATCCCAATGCAACTCTTTTCAGTTCCAATGTTTAACTTTTCACATACGCACCTTCATTGTGGCTCTGGCTTCGATCAGCCTTGTGTTTCTAAATCTGAAAATCCAGCTTCAACCCAAAAATCAAAACTGGCAAAATTTGTACGTTTTGCAAGTTGTGGTGCATTTGCACTTTTGTGTCTTGGGGCTATCTTTATGTATCGATACCATCAAATGGACAGGCGCAAAAATGAAGTCTTTGTTGATGTTTCAGGTGAAGACGAGAGTAAAATTTCTTTTGGGCAATTGAGAAGATTTTCTTGGCGTGAACTCCAACTTGCCACAAAAAATTTCAGTGAAAGCAATGTAATTGGGCAGGGTGGCTTTGGAAAAGTGTACAAAGGAGTGCTCTCAGATAATACTAAAGTTGCTGTTAAACGCCTCAGTGATTACAATAATCCTGGTGGTGAAGCTGCTTTCGAGAGAGAAGTTCAACTAATAAGTGTTGCAGTTCATAGAAACCTCTTAAGACTAATCGGCTTCTGTGCTACCTCAACTGAAAGAATTCTTGTATATCCTTTTATGGAAAATCTAAGTGTAGCATACCGATTAAGAGATTTAAAACCTGGGGAGAAAGGCTTGGACTGGCCAACAAGGAAACGTGTCGCTTTTGGCACAGCCCATGGTTTGGAGTATCTTCATGAGCAATGCAATCCAAAGATAATACATCGTGATCTAAAGGCTGCAAATATCCTACTAGATGAAGAGTTTGAAGCTGTTCTAGGTGATTTTGGGCTGGCTAAGCTGGTTGATACAAGAATGACTCATTTTACCACTCAAGTTCGAGGCACAATGGGTCATATTGCACCAGAATATTTGTCCACTGGAAAATCATCAGAAAAAACTGATGTTTTTGGATATGGCATAACACTTCTTGAACTAGTCACTGGTCAGCGTGCTATAGACCTCTCTAGAATTGAAGAGGATGAGGATGTTCTTCTCATTGATCATGTGAAAAAGCTGCTGAGAGAAAATAGGTTGGAGGACATTGTGGATAGGAATTTGGAGAGTTATGATCCAAAAGAAGTGGAAACCATTCTTCAAGTTGCATTACTTTGCACCCAAGGCTTCCCTGAGGATCGTCCAACCATGTCAGAGGTTGTTAAGATGTTGCAAGGAGTGGGGTTGGCAAATAGATGGGCTGATTGGAAGCAACTTGAAGAGACTAGGAATCAAGAATTCTCACTCATGACTCACCAATTTGTATGGGGTGAAGAATCTACTCTTGATCAAGAAGCTATTCAGCTTTCAAGAGCAAGATAG 1788 0.4038 MFRPNFSGGPLKILTRWLIFLTIFKVTCAMKDPDVEGEALLDFLNVLNDSNHQIRDWDIYLVSPCFSWSHVTCRNGHVISLALASVGFSGTLAPSITKLKYLVSLELQNNNLSGSLPDYISNLTYLQYLNLADNNFNGSIPAKWGQLSSLKHLDLSSNGLTGSIPMQLFSVPMFNFSHTHLHCGSGFDQPCVSKSENPASTQKSKLAKFVRFASCGAFALLCLGAIFMYRYHQMDRRKNEVFVDVSGEDESKISFGQLRRFSWRELQLATKNFSESNVIGQGGFGKVYKGVLSDNTKVAVKRLSDYNNPGGEAAFEREVQLISVAVHRNLLRLIGFCATSTERILVYPFMENLSVAYRLRDLKPGEKGLDWPTRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDEEFEAVLGDFGLAKLVDTRMTHFTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDLSRIEEDEDVLLIDHVKKLLRENRLEDIVDRNLESYDPKEVETILQVALLCTQGFPEDRPTMSEVVKMLQGVGLANRWADWKQLEETRNQEFSLMTHQFVWGEESTLDQEAIQLSRAR* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1079 595 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Apr2g1079 595 Gene3D Transferase(Phosphotransferase) domain 1 350 566 - -
Apr2g1079 595 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 595 - -
Apr2g1079 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672|GO:0006468
Apr2g1079 595 SMART serkin_6 273 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1079 595 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Apr2g1079 595 SUPERFAMILY L domain-like 37 172 - -
Apr2g1079 595 Gene3D Phosphorylase Kinase; domain 1 242 349 - -
Apr2g1079 595 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524
Apr2g1079 595 Gene3D Ribonuclease Inhibitor 33 201 IPR032675 -
Apr2g1079 595 PANTHER LRR RECEPTOR-LIKE KINASE 12 595 - -
Apr2g1079 595 Pfam Protein kinase domain 274 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1079 595 SUPERFAMILY Protein kinase-like (PK-like) 251 546 IPR011009 -
Apr2g1079 595 ProSiteProfiles Protein kinase domain profile. 273 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1079 Apr-Chr2 17139490 17144659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1079 21 595 Receptor kinase-like Gene Family AT5G10290 55.241 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Apr2g1079 Pkinase 7.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1079 - - gmx:100800886 1076.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1079 2 17139490 17144659 Apr2g1079 2 17139490 17144659 ECH