Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1061 ATGGGAGACGGTGGAAGTGGGAACCGCTGGAACAAAGCAGAGTGGCTTCAACAGTACGATCTGTTGGGGAAGATTGGCGAAGGAACTTACGGTCTCGTCTTCCTCGCCAGAACCAAGTCTCCTTCTCCCTCCAAATCCATCGCCATCAAGAAATTCAAGCAATCCAAAGACGGCGATGGTGTCTCTCCCACCGCAATCCGTGAAATCATGCTGCTCAGAGAGATAACGCACGAGAACGTCGTCAAGCTCGTCAATGTTCACATCAACCACGCCGACATGTCGCTCTACCTCGCCTTTGATTACGCCGAGCACGATCTTTATGAAATTATTAGGCATCATAGGGACAAACTCAACCATTCCATTAATCAATATACTGTTAAATCTTTGCTCTGGCAGTTGCTCAATGGACTAAGCTATCTGCACAGTAATTGGATGATACATCGAGATTTAAAGCCATCGAATATATTGGTTATGGGTGAAGGAGAGGAACATGGAGTTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATATCAAGCCCCTTTGAAGCCATTATCTGAAAATGGGGTTGTTGTAACCATTTGGTATCGTGCACCTGAGTTGCTTCTTGGAGCAAAGCATTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGGGCAGAAGTTAAAGCTACATCAAACCCTTTTCAGCTTGATCAACTTGACAAGATATTTAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCATTAGCAAGTCTTCCACATTGGCAACAAGATCTGCAACATATACAAGGACACAAATATGACAACACCAGCCTCTCTAATGTTGTACACCTATCTCCGAAAAGTCCTGCGTATGACCTCTTGTCAAAGATGCTTGAATATGATCCCCGTAAGCGTATAACAGCAGCACAAGCTTTGGAGCACGAGTATTTCAAGATTGAACCATTACCTGGACGAAATGCACTTGTACCCTGTCAACTTGGAGAGAAAATTGTGAATTATCCCACTCGTCCAGTGGACACCTCAACTGATCTTGAAGGGACAACCAATCTGCCACCTTCACAACCGGTATCTGCAGTTTCTGGCAACATGCCTGGTGCTCATGGGTCAACTAGATCTGTCCCACGGCCAATGAATGTTGTTGGCATGCAACGAATGCCACCTCAGGCAATGGCAGCTTATAATCTCACATCTCAGGGAACAATGGGTGATGGAATGAATCCTGGGGGTATTTCAAAGCAACGAGGTGTTCCACAGGCCCATCAGCAGCAACAGTTGAGAAGGAAAGATCAAATGGGGATGCCGGGATACCCTGCACAGCAGAAGTCTAGACGAATATAA 1392 0.454 MGDGGSGNRWNKAEWLQQYDLLGKIGEGTYGLVFLARTKSPSPSKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKLNHSINQYTVKSLLWQLLNGLSYLHSNWMIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATSNPFQLDQLDKIFKVLGHPTLEKWPSLASLPHWQQDLQHIQGHKYDNTSLSNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKIEPLPGRNALVPCQLGEKIVNYPTRPVDTSTDLEGTTNLPPSQPVSAVSGNMPGAHGSTRSVPRPMNVVGMQRMPPQAMAAYNLTSQGTMGDGMNPGGISKQRGVPQAHQQQQLRRKDQMGMPGYPAQQKSRRI* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1061 463 CDD STKc_CDK8_like 18 328 - -
Apr2g1061 463 ProSitePatterns Protein kinases ATP-binding region signature. 25 51 IPR017441 GO:0005524
Apr2g1061 463 SMART serkin_6 19 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1061 463 Gene3D Transferase(Phosphotransferase) domain 1 101 344 - -
Apr2g1061 463 MobiDBLite consensus disorder prediction 359 385 - -
Apr2g1061 463 Pfam Protein kinase domain 19 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1061 463 ProSiteProfiles Protein kinase domain profile. 19 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1061 463 PANTHER CYCLIN-DEPENDENT KINASE E-1 9 462 - -
Apr2g1061 463 PANTHER CELL DIVISION PROTEIN KINASE 9 462 - -
Apr2g1061 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Apr2g1061 463 Gene3D Phosphorylase Kinase; domain 1 6 100 - -
Apr2g1061 463 MobiDBLite consensus disorder prediction 359 394 - -
Apr2g1061 463 SUPERFAMILY Protein kinase-like (PK-like) 14 329 IPR011009 -
Apr2g1061 463 MobiDBLite consensus disorder prediction 421 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1061 Apr-Chr2 16951820 16964491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1061 12 463 Core Cell Cycle Gene Families AT5G63610 77.511 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Apr2g1061 Pkinase 7.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1061 K02208 - gmx:100807993 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1061 2 16951820 16964491 Apr2g1061 2 16951820 16964491 ECH
Apr2g1061 2 16951820 16964491 Apr1g0400 1 5013761 5021574 ECH