Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1057 ATGCAAGGTGAATTGGAATTACCACCCGGGTTCAGATTTCACCCCACCGACGATGAGCTTGTCAATCACTACTTGTGTAGAAAGTGTGCTGCTCAGTCCATTGCTGTTCCCATCATCAAAGAAATCGATTTGTATAAGTTTGATCCATGGCAGCTTCCAGAAATGGCTCTTTACGGTGAGAAAGAATGGTACTTTTTCTCTCCGAGGGACAGAAAATATCCAAACGGTTCGCGGCCGAACCGTGCGGCTGGAACCGGGTATTGGAAGGCGACCGGAGCCGACAAGCCGATCGGAAAGCCGAAGGCTTTAGGGATAAAAAAGGCACTCGTGTTCTACGCCGGCAAAGCCCCAAAAGGAGTAAAGACCAATTGGATCATGCATGAATATCGCCTCGCTAATGTTGACAGATCCGCCAACAAGAAAACCAACAACAACAACTTGAGGCTTGATGATTGGGTGTTGTGCCGAATTTACAACAAGAAAGGGAAGATTGAGAAATACAATAGCGTTGGTGTGATGGATCAGAAAGCTCCCAAGTTTTCAGATGAGGCTCAGTTTCAGCACGAGACCAAGCCTGAGATCAACATGTACGGCCACGATGTTCTGAGGAACGACCAATTGTACACGGACACGTCCGATTCCAGCTGCTCCGAGCACGTGGTTTCCCCGGATGTCACGTGCGACAAGGAGGTTCGGAGCGACGCTAAGTGGAACGACCTTGACTTCGGGCCAGACCCAATTTTGGGCTTCGATATTTTGATGGACCTATCATCAGATGACCCTTTTGCCCCTCAGGCCCAGTACCAACCTTGGCAGGATATGCTGGCTTACCTACCCAAGACATTTTGA 849 0.4912 MQGELELPPGFRFHPTDDELVNHYLCRKCAAQSIAVPIIKEIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSANKKTNNNNLRLDDWVLCRIYNKKGKIEKYNSVGVMDQKAPKFSDEAQFQHETKPEINMYGHDVLRNDQLYTDTSDSSCSEHVVSPDVTCDKEVRSDAKWNDLDFGPDPILGFDILMDLSSDDPFAPQAQYQPWQDMLAYLPKTF* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1057 282 Gene3D NAC domain 16 165 IPR036093 GO:0003677|GO:0006355
Apr2g1057 282 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Apr2g1057 282 PANTHER NAC TRANSCRIPTION FACTOR 56 1 243 - -
Apr2g1057 282 SUPERFAMILY NAC domain 3 160 IPR036093 GO:0003677|GO:0006355
Apr2g1057 282 ProSiteProfiles NAC domain profile. 7 160 IPR003441 GO:0003677|GO:0006355
Apr2g1057 282 PANTHER NAC DOMAIN-CONTAINING PROTEIN 102 1 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1057 Apr-Chr2 16925805 16929959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1057 1 269 NAC Transcription Factor Family AT5G08790 64.130 1.06e-114 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr2g1057 NAM 1.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1057 - - gmx:100170751 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1057 2 16925805 16929959 Apr2g1057 2 16925805 16929959 ECH
Apr2g1057 2 16925805 16929959 Apr1g0405 1 5048070 5049785 ECH