Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1048 ATGGCGAACAAGAGCGTAAAGAAACCGATGAGCCTCAACGATAGCCACTATCGCTTCCTCCAAGATTTCTCTGCTCCTCCCAAACCCTCTTCCCAACCCTTAGATGAATCTATCGAAGCCTCTACAACAAAAAAACATGAAGAAAATATCCCCCAATTTTCTGCAATCACTGACTTCGATTCTCCAATCGGGCAAATTTCGGACGAGAAACGCGAACCATTCAAGGCAGAAGAAGAAGCTGTACCGCAAGATATTCCCCCGTTTTCGGTTGATTCTACTCCTAAGGAAGAAAAGAAGACGAAGGTGAAGGTGCAAGGGCGACGCCGCCTCTGCAAGGTTGCGTATGAAGATGCCGCCAACAATTTGGCGGTTGACGAGTCCCAGTTTGATGACCTCATCGACCTTGATTCGCCCATTCCGGCGCCGAAAAATGTTATCCAGACTAAGGAGACTGTGGAAAAGAATGAAATTAGGGATATTTTGAATGAACTGAACTCTAAGTTTGAGTTGCTATCAGTTGAGAGGAAGCCGGGGCCAAAGCCTGTTGAGGGTGTGGTTGGAGGGAAAGAAACTGGTGATAATGAGGTTTTAGAGTATGGGAGTGCAGGATCTTCATTTTCTCCACAACAGGATAGCTTGTCAGAGGGTAATAAGAATGGCGGTATTGAGTATGATTCAGATGATTCTGTTCAAGAGTTGGATCATTTTGAGCCTGAGAATGATGGGTCCATAACTTTGACTGGGCCAAAATCAACTTATAAGTTGCCGGGTAAAATTGGTAAAATGTTATATCCGCATCAGCGAGAAGGATTGAAGTGGCTCTGGTCTTTGCATTGTCTGGGGAAAGGTGGAATATTGGGGGATGACATGGGTTTGGGGAAAACAATGCAGATTTGTGGCTTTCTAGCTGGACTGTTTCATTCTCGTTTAATCAGAAGGGCATTGGTTGTGGCCCCAAAAACCTTGTTGCCCCATTGGATCAAAGAATTGTCAGCTGTTGGTCTATCTGAGAAAACAAGAGAATATTTTGGAACTTCTACAAAACTCAGAGAATACGAACTTCAGTACATCCTTCAGGATAAAGGTGTTCTTCTCACAACATATGATATTGTCCGCAACAATTCTAAGTCCTTACGGGGGAGTGATTATTCTGATGATGAAGAAAGTGAAGATGGTGTTACATGGGACTACATGATACTTGATGAGGGCCACCTTATAAAGAACCCAAGCACACAGAGAGCTAAAAGTTTGCTTGAAATACCAAGTGGTCATCGCATTGTCATTAGTGGCACACCATTGCAAAATAATCTTAAGGAGTTGTGGGCATTGTTCAATTTTTGTTGCCCAGAAGTGCTTGGTGACAAGAAATGGTTCAAAGAAAGATTTGAAACTCCCATACTTCGTGGAAACGACAAACATGCTACTGACAGGGAGAAGCGTGTTGGTTCATATGTAGCAAAGGAGCTAAGAGATCGTATTCAGCCTTACTTTTTGAGACGTTTAAAGAGTGAGGTTTTCAGTCAAGATGATGGACAAACAACTGCAAAAATTTCTCAGAAACAAGAGATCATTGTGTGGCTTCGATTGACCAATGTTCAGCGGCATCTTTATGAAGCATTTTTGAGGAGTGAGATTGTTCTCTCAGCATTTGATGGTTCACCACTGGCTGCCCTTACAATTTTGAAGAAAATAAGTGATCATCCACTTCTGTTGACAAAGCGGGCAGCTGAGGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAGGTTAATGTTGCAGAAAAACTGGCAATGCACATAGCAGATGTTGCGGACTCGGATAAGTTTAAAGATGAGCAGGATGTATCGTGCAAAATTTCCTTCATTATGTCATTATTGGGTAATTTGATCCCAGAAGGGCATAGTGTGCTTATCTTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGCCTTGTATCCAAAGGTTATGAGTTTTTACGAATTGATGGTACGACAAAAGCCAGTGACAGACTAAGGATTGTTAATGATTTCCAAGAAGGTGTTGGAGCTCCTATATTTCTCTTGACATCTCAGGTTGGTGGTTTAGGACTGACGCTTACAAGAGCAGATCGTGTGATTGTAGTTGATCCTGCTTGGAACCCGAGCACGGATAATCAAAGTGTTGACCGTGCATATCGGATTGGTCAAAAGAAAGATGTTATTGTATATAGATTGATGACATGTGGAACTGTTGAAGAAAAGATCTACAGAAAGCAGGTATACAAGGGAGGATTGCTCAAAACTGCTACCGAACATAAAGAACAAATTCGGTATTTCAGCCAGCAGGATCTTCGGGAGCTTTTCAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACCCAAAGGCAATTGAATGAGGAGCATGATCGTCAACATACAGTTGATGACTTTTTCAAAGCACATATAGAGTTCTTGAAAAGTCTAGGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTCTCCAAGACAGCGCCAGTTCAAGCTGATCCTGAGGATGATGAAGTTACAAGGAATCATAGGACCACATATATTGGAACTTCAACATCATATTCATACGAGCATATTGCTGATGGCGCTGAGTTTGCCTTTAATCCTAAGGATGCCAAGTTAAACAAAAAAGGTTCTTCTCCTAGCAGTGCTGGTAAATTGACCGAGTCAGAAATCAAGGATAAAATTAAGCGGCTCTCTCAAACACTCTCAAATACGGCGATGATTTCTAAATTACCTGACAAGGGAGAGAAACTACAGAAGCAGATTGCGGAGCTGAATTTAGAGCTCGCAAAACTAAAATCGGAAGAAAAAGATGTAGTTGATTTGGATGACTTTACTAGTGATTTTCAAAGGGTGTTGAATGTATAG 2910 0.4189 MANKSVKKPMSLNDSHYRFLQDFSAPPKPSSQPLDESIEASTTKKHEENIPQFSAITDFDSPIGQISDEKREPFKAEEEAVPQDIPPFSVDSTPKEEKKTKVKVQGRRRLCKVAYEDAANNLAVDESQFDDLIDLDSPIPAPKNVIQTKETVEKNEIRDILNELNSKFELLSVERKPGPKPVEGVVGGKETGDNEVLEYGSAGSSFSPQQDSLSEGNKNGGIEYDSDDSVQELDHFEPENDGSITLTGPKSTYKLPGKIGKMLYPHQREGLKWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALVVAPKTLLPHWIKELSAVGLSEKTREYFGTSTKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGSDYSDDEESEDGVTWDYMILDEGHLIKNPSTQRAKSLLEIPSGHRIVISGTPLQNNLKELWALFNFCCPEVLGDKKWFKERFETPILRGNDKHATDREKRVGSYVAKELRDRIQPYFLRRLKSEVFSQDDGQTTAKISQKQEIIVWLRLTNVQRHLYEAFLRSEIVLSAFDGSPLAALTILKKISDHPLLLTKRAAEDVLEGMDSMLKPEEVNVAEKLAMHIADVADSDKFKDEQDVSCKISFIMSLLGNLIPEGHSVLIFSQTRKMLNLIQECLVSKGYEFLRIDGTTKASDRLRIVNDFQEGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLLKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHDRQHTVDDFFKAHIEFLKSLGIAGVSHHSLLFSKTAPVQADPEDDEVTRNHRTTYIGTSTSYSYEHIADGAEFAFNPKDAKLNKKGSSPSSAGKLTESEIKDKIKRLSQTLSNTAMISKLPDKGEKLQKQIAELNLELAKLKSEEKDVVDLDDFTSDFQRVLNV* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1048 969 Gene3D - 245 521 IPR038718 -
Apr2g1048 969 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 275 450 IPR014001 -
Apr2g1048 969 Gene3D - 522 819 IPR027417 -
Apr2g1048 969 Pfam Helicase conserved C-terminal domain 620 732 IPR001650 -
Apr2g1048 969 Coils Coil 929 956 - -
Apr2g1048 969 MobiDBLite consensus disorder prediction 1 101 - -
Apr2g1048 969 CDD SF2_C_SNF 612 743 - -
Apr2g1048 969 PANTHER SNF2/RAD54 FAMILY MEMBER 234 860 - -
Apr2g1048 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 805 IPR027417 -
Apr2g1048 969 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 623 782 IPR001650 -
Apr2g1048 969 Pfam SNF2-related domain 266 568 IPR000330 GO:0005524|GO:0140658
Apr2g1048 969 PANTHER OS04G0692700 PROTEIN 234 860 - -
Apr2g1048 969 MobiDBLite consensus disorder prediction 64 79 - -
Apr2g1048 969 MobiDBLite consensus disorder prediction 200 219 - -
Apr2g1048 969 MobiDBLite consensus disorder prediction 47 61 - -
Apr2g1048 969 MobiDBLite consensus disorder prediction 200 221 - -
Apr2g1048 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 500 IPR027417 -
Apr2g1048 969 SMART helicmild6 649 732 IPR001650 -
Apr2g1048 969 SMART ultradead3 258 461 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1048 Apr-Chr2 16841679 16853652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1048 263 786 RAD5 or RAD16-like Gene Family AT1G02670 25.352 1.18e-35 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr2g1048 SNF2_N 2.5e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1048 K20093 - gmx:100779283 1540.01