Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1041 ATGGAATATGAAAGCCATAACAATTTGTCAAATGGGATCAAAACAGAGTGCCCTGAAAGTCCTTGCCTAAAGACAACAAACAACAACAGCAACAACAACAAAGAACAGGACCGTTTTCTCCCTATAGCCAATGTGGGAAGAATCATGAAAAAAGTGATTCCCCAAAATGGGAAAATCTCAAAGGATGCAAAAGAGACAGTTCAAGAATGTGTGTCAGAGTTCATTAGCTTTGTGACTGGGGAAGCATCTGACAAATGCCAAAGAGAAAAGAGAAAGACCATCAATGGGGATGATATCATATGGGCCATCACAACCTTAGGCTTTGAGGATTATGTGGAACCATTAAAAACTTACCTCCAGAAATATAGAGACATAGAAGGAGAAAAGCCTAATATTCCAAAGCAACTTCGTTCTGAACAAAGGCTACAACACCACCATCATAACCAAGATGAAAATAATCAACCATTCAACAGTGTATATAATAACCCAACAAATCTCATTTCTCAGCCTCCCTATGTGGTCACTGGTCAACAATTTTCACTCCCCTTCTCCCCAAATTCAATTCAAAAACAGCTACGGCCTCAAGACCAGATTGATTCATTGGGGCATTGGTACGAGTGA 621 0.3977 MEYESHNNLSNGIKTECPESPCLKTTNNNSNNNKEQDRFLPIANVGRIMKKVIPQNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKTYLQKYRDIEGEKPNIPKQLRSEQRLQHHHHNQDENNQPFNSVYNNPTNLISQPPYVVTGQQFSLPFSPNSIQKQLRPQDQIDSLGHWYE* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1041 206 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 39 103 IPR003958 -
Apr2g1041 206 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 196 IPR027113 GO:0001228|GO:0006355|GO:0016602
Apr2g1041 206 MobiDBLite consensus disorder prediction 139 162 - -
Apr2g1041 206 ProSitePatterns NF-YB/HAP3 subunit signature. 70 86 IPR003956 GO:0005634|GO:0006355|GO:0043565
Apr2g1041 206 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 1 196 - -
Apr2g1041 206 PRINTS CCAAT-binding transcription factor subunit A signature 67 85 - -
Apr2g1041 206 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Apr2g1041 206 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Apr2g1041 206 Gene3D Histone, subunit A 26 159 IPR009072 GO:0046982
Apr2g1041 206 SUPERFAMILY Histone-fold 36 151 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1041 Apr-Chr2 16797598 16798218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1041 10 204 CCAAT-HAP3 Transcription Factor Family AT2G13570 63.507 3.81e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Apr2g1041 CBFD_NFYB_HMF 2.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1041 K08065 - gmx:100780647 328.561