Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1033 ATGGCTAGTGGAAGTGTCAACCTTCCTCCTGGCTTTTGCTTCTCTCCAACTGATGAAGAACTCATCCTTCACTTTCTTTATCCCAAGGCTTCTCTACCATCCCATCCCAACATCATACCAGAGCTTGACCTCTCTCTTCTCCTTCCATGGGAATTAAATGGTAAAGCGTTGTCAAGTGGAAATCAACACTATTTTTTCACCAAAGGGAAGGAAAATAGATCCACTGAAAATGGATATTGGAAGGAAATAGAAGTCACAAAACCTATAGTATCATCCTCTGATGACAAAGTCGGGATCAAGAAGTACCTCGTGTTCAACCTTGGTGAAGCTCCACAAGGCACTGAAACCACTTGGGTCATGCAAGAATATCATATTTCCTCATCTGGATTTAACACTGCATCTTGTGGAAGTACTCGTGGGAGACGAAAATCCGATCAAAATAGGAGCAAATGGGTTTTGTGCAGAGTCTATGAAAAGAAGAGGTCTCAATCCCAACAAGGTGTAAGCTGTTACAGCGATGAGGATGACAGTGGAACAGAACTTTCATGGCTAGACGAATTTTATATGTCGTTAGATGATGATCTTGAAGAAATTATAAGCTTGCCTAATTAG 612 0.4134 MASGSVNLPPGFCFSPTDEELILHFLYPKASLPSHPNIIPELDLSLLLPWELNGKALSSGNQHYFFTKGKENRSTENGYWKEIEVTKPIVSSSDDKVGIKKYLVFNLGEAPQGTETTWVMQEYHISSSGFNTASCGSTRGRRKSDQNRSKWVLCRVYEKKRSQSQQGVSCYSDEDDSGTELSWLDEFYMSLDDDLEEIISLPN* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1033 203 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Apr2g1033 203 PANTHER NAC TRANSCRIPTION FACTOR 56 4 198 - -
Apr2g1033 203 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
Apr2g1033 203 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 198 - -
Apr2g1033 203 Pfam No apical meristem (NAM) protein 9 125 IPR003441 GO:0003677|GO:0006355
Apr2g1033 203 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1033 Apr-Chr2 16700325 16701645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1033 1 163 NAC Transcription Factor Family AT1G61110 41.040 6.13e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr2g1033 NAM 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1033 - - gmx:100779578 344.354