Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1030 ATGAACAAATCTCAAAACACAATCCCCCACTTATTCAGATGCCCCATCAGTTTAGACTTGTTGGAAGATCCTGTTACTTTATGCACAGGCCAAACCTATGACAGATCAAACATAGAAAAATGGTTGGCCGCAGGTAACCTCACATGCCCTGTCACAATGCAGAAGCTTCATGATCCAACCATTGTTCCCAATAACACTCTTCGCCACTTGATCAATCAGTGGCTTCAACTTGGTCCTCAATTTGACCCTTGTGACTCTGCAGCCGCAACTGTTGATTCTCTAGCTTCTATCAAACTCACCCTTGAATCTCATGAGACCACCTTAGGAAACAAGCTCCAAGCACTTGAAAAAATCATTCTCTTATCTGATGAGTATTGTTCTTTTAAGAAATCATGCTTCCTACAATTGGATTTCTTACCACTGCTTTTGGAACTAGTTTTTGGAAGAGCAGAAACTCACATGAACTTCATAGAGCTAGCACTTCGCTGCATTCTAAAATTGTTGCCTCTTGGTAGTTTCGAGCCTCTAAATATGATCAAAGATGAGTCTAAATTAGCCACATTCCTGTTATTATTTGAAAAGGGCACTAGCTCGGTTAAGACTAGTTTGTGCCATTTTATAGAATCAGCATCATCATCATCTCAAACAGAAGAACTATGTTCTATTCTTGGAAACTCTCACGAAATAGTGCATGAGATTGTTCAAATTGTTAGCCAAAATTGCGAGATTTCTGAGGATGCAATTAAGGGCATATCAGCGCTATGTTCATTGCAGTCTAACAGAGAGAGTCTAGTGAGAGGAGGAGCAATAAACGGGATCATAAAATACATTTCATCGTGTTGTGAAAGAAGAAACTTAGCACCACTTGGTATGAGAATAGTAGAGAAACTTGTGGAGTTGGAAAGTGCTAGAGAAGCATTGGTGAATCATCCAAAAGGTATTGAAACTTTGGTGAATATGGTTTTCAGGGTATCTGATCAAGAGTGTAGTGAGAGTGCTGTTGAGGTACTTTTAACTGTTTGTGGTGATCTTGGGCGTGCAAGAGAGGAAGCCATTGGGGCTGGAATTTTGACTCAGTTGCTATTGCTTTTGCAGAGTCAGTGTAATAACACAACAAAATCAAAGGCAAGAATGCTGCTCAAACTGCTAAGATCCAAGTGGACTGAGGACCCAAAGCAGAGTTAG 1185 0.4034 MNKSQNTIPHLFRCPISLDLLEDPVTLCTGQTYDRSNIEKWLAAGNLTCPVTMQKLHDPTIVPNNTLRHLINQWLQLGPQFDPCDSAAATVDSLASIKLTLESHETTLGNKLQALEKIILLSDEYCSFKKSCFLQLDFLPLLLELVFGRAETHMNFIELALRCILKLLPLGSFEPLNMIKDESKLATFLLLFEKGTSSVKTSLCHFIESASSSSQTEELCSILGNSHEIVHEIVQIVSQNCEISEDAIKGISALCSLQSNRESLVRGGAINGIIKYISSCCERRNLAPLGMRIVEKLVELESAREALVNHPKGIETLVNMVFRVSDQECSESAVEVLLTVCGDLGRAREEAIGAGILTQLLLLLQSQCNNTTKSKARMLLKLLRSKWTEDPKQS* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1030 394 PANTHER OS02G0542800 PROTEIN 7 386 - -
Apr2g1030 394 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Apr2g1030 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
Apr2g1030 394 CDD RING-Ubox_PUB 12 54 IPR045210 -
Apr2g1030 394 SUPERFAMILY RING/U-box 6 76 - -
Apr2g1030 394 SUPERFAMILY ARM repeat 112 383 IPR016024 -
Apr2g1030 394 PANTHER WDSAM1 PROTEIN 7 386 IPR045185 GO:0061630
Apr2g1030 394 Gene3D - 86 390 IPR011989 -
Apr2g1030 394 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Apr2g1030 394 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1030 Apr-Chr2 16643036 16644220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1030 8 390 U-box Gene Family AT1G49780 32.494 2.06e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1030 - - gmx:100805322 568.155