Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1027 ATGCCGGCTTGGTGGAGTAGAAAGTCCAGCAAGAACAAGCAGGAGCACGAGGAGGAGGAGGAGGAGGTAGAAGAAGAAGAGACACGTGGCGGTCTTCAATTTAATTTCCTGAAATCTCCGGTTACTATTAGGAACGGTGACAAGGATAAGAGTAAGAAGAAGAAGAAGAAACCGAAGAGCTTCGACGAGCTTTTCTCTCGGAATTCGCCAAGGACTAGCAAGGATTTCGATGGCGGCCAGAAGAAAGGGGTTCCCCTGCCTTTACCCACTCACAGTCACAGCGATCAAGCCTTTGCAAATGGATCTGCTTCCGTATCTGGTTCCAGCGTCAGCTCCTCCACCTCCTTCGATGACCATCCAATTTCTCCTCAATTCAATGCCAACAGAGGGCAAGATGAGGTGAAGTTCAGTGTGACTGTGAGGTCAAAGAGTCCAGGTCCTGGATCACGAGGGCCCACCAGCCCTACATCACCGCTTCATCCAAGGTTGCATGTTTTGAGTCTTGATTCTCCTACAGGTAAGCAAGACGATGGAAAGAGTGAATGTCATCCATTGCCTCTTCCACCTGGCTCTCCAACTAGTCCTTCTGCACTTTCCAACACACGACCAAATGGACTGTTAGAAAACACTACCGGCAATCTCTCCAAATGGAAAAAAGGAAAGCTTCTAGGACGGGGAACATTTGGGCATGTGTATCTTGGATTCAATAGTGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAGAGTTGTCTCTGATGATCAAACATCAAAAGAGTGCCTCAGACAACTTAACCAGGAGATAAATTTGCTAAATCAGCTTTCACACCCAAATATTGTTCAATACTATGGGAGTGAACCGGTTGAAGAATCTCTTTATGTATATTTGGAATATGTCTCTGGTGGTTCTATCCATAAATTACTTCAGGAGTATGGTGCGTTTAAGGAGCCTGTTATTCAAAATTATACCAGGCAGATTGTATCTGGACTTGCCTATCTGCATGGAAGAAATACAGTACACAGGGATATTAAAGGGGCGAACATACTAGTTGATCCTAATGGTGAAATCAAACTGGCAGACTTTGGAATGGCTAAACATATAAATTCTTCTGCCTCAATGCTTTCATTCAAAGGAAGTCCATACTGGATGGCACCTGAGGTTGTAATGAATTCAAATGGCTATAGTCTTCCAGTTGATATATGGAGCTTGGGATGCACAATTATTGAAATGGCAACATCAAAACCTCCGTGGAATCAGTATGAAGGGGTAGCTGCCATATTTAAAATTGGGAACAGCAAAGATATGCCTGAAATCCCTGAGCATCTTTCGAATGATGCAAAGAATTTCATCAAGCTATGCTTACAAAGGGACCCATCAGCACGCCCTACAGCCCAAAAGTTACTAGACCACCCCTTCATTCGAGATCAATCAGCAACAAAAGCTGCAAATGTTAGCATAACCAGAGATGCTTTCCCTTACATGTTTGATGGAAGTCGAACCCCGCCTGTGTTAGAGTCTTACTCCAATCGAACAAGTATAACTTCACTTGATGGAGATTATGCATCAAAGTCTGCTCTTGCAGCTCCACGTGCATTAAGGAGTCCAAGAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTCTTCAAGTCCACTAAGACAGTTCGGGCCAGCACATAAGAGCTGTTTCTTTTCTCCTCCACATCCAGCTTACACAATAATTGGACAAAATAGTTACACTTTGAATGACATGTCCTCGTATCCAGTGAGATCAAATGCCACGTTCGCTCTTGATCCTTGGCACGAAACATCGCGATACAAAGCTCATACACCACCTGGTGGATCTCCAAGAATGAGACTCATCTGA 1872 0.4391 MPAWWSRKSSKNKQEHEEEEEEVEEEETRGGLQFNFLKSPVTIRNGDKDKSKKKKKKPKSFDELFSRNSPRTSKDFDGGQKKGVPLPLPTHSHSDQAFANGSASVSGSSVSSSTSFDDHPISPQFNANRGQDEVKFSVTVRSKSPGPGSRGPTSPTSPLHPRLHVLSLDSPTGKQDDGKSECHPLPLPPGSPTSPSALSNTRPNGLLENTTGNLSKWKKGKLLGRGTFGHVYLGFNSENGQMCAIKEVRVVSDDQTSKECLRQLNQEINLLNQLSHPNIVQYYGSEPVEESLYVYLEYVSGGSIHKLLQEYGAFKEPVIQNYTRQIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSASMLSFKGSPYWMAPEVVMNSNGYSLPVDIWSLGCTIIEMATSKPPWNQYEGVAAIFKIGNSKDMPEIPEHLSNDAKNFIKLCLQRDPSARPTAQKLLDHPFIRDQSATKAANVSITRDAFPYMFDGSRTPPVLESYSNRTSITSLDGDYASKSALAAPRALRSPRDNTRMITSLPVSPSSSPLRQFGPAHKSCFFSPPHPAYTIIGQNSYTLNDMSSYPVRSNATFALDPWHETSRYKAHTPPGGSPRMRLI* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1027 623 Gene3D Transferase(Phosphotransferase) domain 1 214 493 - -
Apr2g1027 623 CDD STKc_MEKK1_plant 216 473 - -
Apr2g1027 623 ProSitePatterns Protein kinases ATP-binding region signature. 223 246 IPR017441 GO:0005524
Apr2g1027 623 Pfam Protein kinase domain 218 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1027 623 MobiDBLite consensus disorder prediction 194 212 - -
Apr2g1027 623 Coils Coil 6 29 - -
Apr2g1027 623 MobiDBLite consensus disorder prediction 56 78 - -
Apr2g1027 623 SUPERFAMILY Protein kinase-like (PK-like) 215 543 IPR011009 -
Apr2g1027 623 MobiDBLite consensus disorder prediction 93 156 - -
Apr2g1027 623 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 604 - -
Apr2g1027 623 MobiDBLite consensus disorder prediction 1 212 - -
Apr2g1027 623 PANTHER MAP KINASE KINASE KINASE 1 604 - -
Apr2g1027 623 SMART serkin_6 217 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1027 623 ProSiteProfiles Protein kinase domain profile. 217 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1027 Apr-Chr2 16623820 16629459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1027 1 536 MAP Kinase Kinase Kinase AT1G53570 58.470 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Apr2g1027 Pkinase 2.4e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1027 K04421 - gmx:100787064 934.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1027 2 16623820 16629459 Apr1g0450 1 5515193 5520675 PCT