Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1017 ATGAGCGGAAATGGCAGAAAGCACTCTTCAAAGTGGGATTCAAGAGATCAACATGAATTTGCACCAGATAGTGTTGCTAGTAGCAATAGTTCAAAGTGGTCCTATTTGGAAAGAAATGATAAGTTAAAATCCAGAATGGGATTTTCATTCAAGGAACCTTTTCCTGAAGGCAGAGGATCAAATAAAGATGATATTACGAGTAAAGACTACAGAGCTTTGGATGCAACAAGTGCACAGGACACTGATAGAAGTTACAGCATGGAAATGTCACCAGGGCTTGAGGATTGGAAAAGTAAGAAGTACAGTCAATCCCCAAGAAATGGTTGCAGTCAGTCAGTCAGGAATGCTCGGAGCCGGAGCAGAAGTCGGAGCCCTTCACGTGGTTTTAGGTGGGATTCAGGAGTCAATGACAGATGTAGAATGAGGGCTGGAGGATTGGCACAACCATGTAGAGATTTTGCTGCTGGAAAATGCAGGAGAGGCAGCCAATGCCATTTCCTTCACCATGATGATCAAAATTATGATGATAACTGGGAAAGTAGACACAGGAAAGATGGCACTCCCAGATATTCTACTCTCCATGAGAGTGGGGACTACTCTCGTACAAGTGGAAGATCTAAGGAAACTTGTATCAATTATGCAAAAGGAAGGTGTAGAATGGGAGCATCATGCAAGTATGTGCATCATGACAATTCTGATCAGTTCAGTAAATTTTCTGTGGATGAAGCAACTAGGGAAAGGGAAATTGACAGAAGGCGTACAGAGAATACTTTAGAGCAGGGTGGTCGACACGGTCCAAACCACAATGGTGATATTCCTTGCAAATTTTTTGCATTTGGTAATTGTCGAAATGGCAAACGTTGCAGATTTTCTCATGATAGGCAAGCATCCAGGAGCCCTAATAGAATATTAAATGATGATAGGTCAAGAAGCAATCAAGGTGAAGATCAGGCTCTGGATAGGCCAAAATTGAGTGACAAAGTTAGTCCAAATGGAAGGCTAAGAGATGATAGATGGGGTTTAGATGGCAGTATGGCTGATAGAGATGAAGTTTGGGATGGTTCCAAACAGAATGATTTAGTTGTTGTCCCTGATTTAGTGAAACTGGTTAAGGATAACAAAACTGGGATTATGGGCACCCCAGAACCTGGATTCATGGCTTGGCCAATTATTGATGGATGGGACCATAGCTTAGATAAGAACAGAGTGCATGGTGGATCACCATTTTCAAGTGATAAGAAGGAAGAAGCTAACTGTTGGACAGCCAAAAATGATAGTGCCAACATTCACTCATCCCAGTCAGTAGCTGCAGACATTTGGCCTGGTAATGAAAAAATGTCTCCTGATTGGAATTATGGTGTGGGATCTTCCAGCCATACTAAAGAAGAGCACGGGAAGAGTAAGCAACAAGTTGCTCCAGGACAAGGATTTAATCAGAATGTAAATACTTTGCATTCTTCAAGCTGCCATGCAGTTGGACAGAGTCAAGTAGCAGTCTCCATTGTTCCTCCAAGACTGGGAACTGTTGAAGTTATGCAGAACCAGGAAGTCTCTACTGAGAAAAAATACATGGTTGAGCCAAATATCATGGATGCGAACCTATCACAAGTTGGTTCACGAAATCCTCCAACTCAGAACATGGTAAGCAAAGAACAGCTTACTCACCTTACCAGCCTGTCAGCCTCCTTGGCACATATCCTTGGAACAGGTCGGCAGCTTCCACAACTTTATGTTACTTCTATTTCCCAAGATGCAAAGGATACTCCCTTCCTAAGCAAAACTGAAGGGTTTGGCAAGCCTGCTTCCATAACATTCATCAAGCCAGATCCTGCTGTTGAATTGCAGAAGCAGTGTGATCCAATGTGTGATAGTATGGAGCCAAATAAGGCTAATGTAAATGGGGTACCCACTACTCTTTCTCCAAGTAAAAAAGTTCCATCACTTTTACCTAAGGTAGGACAACATTTTGATGACTCTAAGACTGCCTTTTCAGAAGAACAACTTGTCAAAAGTGAACATTCAATTCAGTTGCAGAAAGTTGAAAACATTGAGGTTAATAAGGAGAACAATGAAGTGGTAGCAGAAGAAAAGCAAAGTTCTCGAATTGAAAATAAAATTACAGAAGAGAATGGTCCTTTGGAAAACATGGACCAAAACAGTGGACCTGATGATGAGGCCAAGAAAATAAAGGATGTAAAGGGTATTCGTGCATTTAAGTTTTCATTGGTTGAGTTTGTTAAGGAGCTTCTGAAACCAACGTGGAAAGAAGGTCAAATCACCAAAGAAGATTATAAAGCTATTGTGAAGAAAGTTACTGATAAAGTAACTGGTACAGTGCAGCGGGTACATATTCCTCAGACACAAGAGAAAATTGACCGCTATTTATCATTTTCGAAACCAAAGCTTAACAAACTTATACAGCTTTCTTATAATCACTCTCCCTTTGGTTGCAGGCATATGTGGAAAAGGTTCAGAAGGCTTAGTGCAAGTATAGAAATTTGGCTATGTAATCTGTTGACTAAATTTTGCCAAGTTTGTTTTCTTTGCGTATTCTGTTTCTTCTATGCACAATAA 2574 0.4087 MSGNGRKHSSKWDSRDQHEFAPDSVASSNSSKWSYLERNDKLKSRMGFSFKEPFPEGRGSNKDDITSKDYRALDATSAQDTDRSYSMEMSPGLEDWKSKKYSQSPRNGCSQSVRNARSRSRSRSPSRGFRWDSGVNDRCRMRAGGLAQPCRDFAAGKCRRGSQCHFLHHDDQNYDDNWESRHRKDGTPRYSTLHESGDYSRTSGRSKETCINYAKGRCRMGASCKYVHHDNSDQFSKFSVDEATREREIDRRRTENTLEQGGRHGPNHNGDIPCKFFAFGNCRNGKRCRFSHDRQASRSPNRILNDDRSRSNQGEDQALDRPKLSDKVSPNGRLRDDRWGLDGSMADRDEVWDGSKQNDLVVVPDLVKLVKDNKTGIMGTPEPGFMAWPIIDGWDHSLDKNRVHGGSPFSSDKKEEANCWTAKNDSANIHSSQSVAADIWPGNEKMSPDWNYGVGSSSHTKEEHGKSKQQVAPGQGFNQNVNTLHSSSCHAVGQSQVAVSIVPPRLGTVEVMQNQEVSTEKKYMVEPNIMDANLSQVGSRNPPTQNMVSKEQLTHLTSLSASLAHILGTGRQLPQLYVTSISQDAKDTPFLSKTEGFGKPASITFIKPDPAVELQKQCDPMCDSMEPNKANVNGVPTTLSPSKKVPSLLPKVGQHFDDSKTAFSEEQLVKSEHSIQLQKVENIEVNKENNEVVAEEKQSSRIENKITEENGPLENMDQNSGPDDEAKKIKDVKGIRAFKFSLVEFVKELLKPTWKEGQITKEDYKAIVKKVTDKVTGTVQRVHIPQTQEKIDRYLSFSKPKLNKLIQLSYNHSPFGCRHMWKRFRRLSASIEIWLCNLLTKFCQVCFLCVFCFFYAQ* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1017 857 Gene3D - 266 338 - -
Apr2g1017 857 MobiDBLite consensus disorder prediction 102 119 - -
Apr2g1017 857 Gene3D - 146 243 - -
Apr2g1017 857 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 807 - -
Apr2g1017 857 MobiDBLite consensus disorder prediction 291 342 - -
Apr2g1017 857 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 149 169 IPR000571 GO:0046872
Apr2g1017 857 MobiDBLite consensus disorder prediction 72 86 - -
Apr2g1017 857 MobiDBLite consensus disorder prediction 56 70 - -
Apr2g1017 857 ProSiteProfiles Zinc finger C3H1-type profile. 204 231 IPR000571 GO:0046872
Apr2g1017 857 MobiDBLite consensus disorder prediction 453 482 - -
Apr2g1017 857 SUPERFAMILY CCCH zinc finger 271 293 IPR036855 GO:0046872
Apr2g1017 857 MobiDBLite consensus disorder prediction 239 270 - -
Apr2g1017 857 Pfam CCCH-type zinc finger 273 293 IPR041367 -
Apr2g1017 857 Pfam RNA-binding, Nab2-type zinc finger 210 228 - -
Apr2g1017 857 MobiDBLite consensus disorder prediction 239 259 - -
Apr2g1017 857 Coils Coil 685 705 - -
Apr2g1017 857 MobiDBLite consensus disorder prediction 706 725 - -
Apr2g1017 857 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 807 - -
Apr2g1017 857 MobiDBLite consensus disorder prediction 176 191 - -
Apr2g1017 857 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Apr2g1017 857 SMART c3hfinal6 205 230 IPR000571 GO:0046872
Apr2g1017 857 SMART c3hfinal6 144 170 IPR000571 GO:0046872
Apr2g1017 857 MobiDBLite consensus disorder prediction 176 201 - -
Apr2g1017 857 ProSiteProfiles Zinc finger C3H1-type profile. 273 295 IPR000571 GO:0046872
Apr2g1017 857 MobiDBLite consensus disorder prediction 46 129 - -
Apr2g1017 857 MobiDBLite consensus disorder prediction 1 34 - -
Apr2g1017 857 ProSiteProfiles Zinc finger C3H1-type profile. 149 171 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1017 Apr-Chr2 16495922 16504429 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr2g1017 zf-CCCH_4 1.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1017 - K22909 gmx:100783856 946.806