Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1005 ATGGTCAGAGACGATCTCTACATCACGGTTCCCAGCTTCTTCCGGTGCCCCATATCCCTCGACGTTATGAAATCCCCTGTCAGCCTCTGCACCGGAGTAACCTACGACCGTTCCAGCATCCAACGCTGGCTTGACAACGGGAACAACACCTGCCCCGCTACTATGCAGGTCCTCCAAAGCAAAGAATTCGTTCCTAATCGCACCTTACAGAGACTCATCCAGATCTGGTCCGACTCGGTCCGTCACCGAGTCGACTCGCCCGAGTCCCCACCCCCCACCGAATCCCTCCTTTCCAACGACCAAGTCCTCCTAGCCATCTCCGAGTTGGACACTCGCACCGACAACCGGTTCGACTCGCTCACCAAAATCGTCCGTTTCGCACAAGATTCCGAAGAGAACCGCGATTTTCTTGTGAGAACGGAATGCTTCGTTCCCGTGCTGGTTGGCTTCCTCGACAATGTCAATGGCGGAGTGCAACGGAACGTCCAGTTCCTCGAACAGGTGGTTAAGGCGTTGGATTTGGTTCTAAGTAAAATGGAGGATCGCGAGGGGTTCACAAATTCGATGCTGCAGAAGCCGAGTGAGGGACAGAAACAGAAACATAGCAGCATAGATTCACTGCTTCTCGTCCTGCAACAAGGAAGCTGCGATTCAAGGATCGTTGCGGCTAGGGTTTTGAAATCCATCGCCATAGACGCGGAATCGAAGCTTTTGATAGCGGAAAAGGAAGGCCTGGTATCCGAATTGCTCCGTCAAATAACGCCGAACAGAGATCCGGATCTAATCGAGAACTGCTTGTCGTGCTTGGTGGAAATTTCAACGCCGAAACGGAACAAAATGAAGCTAGTGCATCTCGGAGCCGTTAAGGTGTTCTCGAAGCTTCTTTCGGCTCCGAATTTGAGCGTTTTGGTGACGGAGAAGGTTCTGAAGCTGGTGGAAACGGTGTCGTCCACGAAGGAAGGGAGGTCGGAGATATGTGAGGACACGGCGTGCGTGGCGGCGATAGTGAACAAGGTTTTGAAGGTGTCGAACGTGGCAACGGAACACGCCGTGACGACGCTGTGGAGTGTGTGTTATTTGTTTAGGGATCAGAAAGCACAAGAAGCCGTTACGAAGGCTAACGGCTTGACCAAGATTCTGCTTCTGATGCAGAGCAATTGCTCGCCCCAAGTGCGCCAAATGTCCGCGGATTTGCTTAAGATCTTTCGGGTTAATTCTAAGTCGTGTCTTTCTTCTTATGACACCAAGACCACTCATATTATGCCCTTTTGA 1272 0.5181 MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVRHRVDSPESPPPTESLLSNDQVLLAISELDTRTDNRFDSLTKIVRFAQDSEENRDFLVRTECFVPVLVGFLDNVNGGVQRNVQFLEQVVKALDLVLSKMEDREGFTNSMLQKPSEGQKQKHSSIDSLLLVLQQGSCDSRIVAARVLKSIAIDAESKLLIAEKEGLVSELLRQITPNRDPDLIENCLSCLVEISTPKRNKMKLVHLGAVKVFSKLLSAPNLSVLVTEKVLKLVETVSSTKEGRSEICEDTACVAAIVNKVLKVSNVATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPQVRQMSADLLKIFRVNSKSCLSSYDTKTTHIMPF* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1005 423 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 423 - -
Apr2g1005 423 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Apr2g1005 423 Coils Coil 162 182 - -
Apr2g1005 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 86 IPR013083 -
Apr2g1005 423 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Apr2g1005 423 PANTHER WDSAM1 PROTEIN 4 423 IPR045185 GO:0061630
Apr2g1005 423 CDD RING-Ubox_PUB 14 56 IPR045210 -
Apr2g1005 423 SUPERFAMILY ARM repeat 115 403 IPR016024 -
Apr2g1005 423 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Apr2g1005 423 SUPERFAMILY RING/U-box 5 79 - -
Apr2g1005 423 Gene3D - 103 412 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1005 Apr-Chr2 16316625 16318922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1005 1 423 U-box Gene Family AT5G64660 54.398 1.43e-149 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1005 - - gmx:100799627 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1005 2 16316625 16318922 Apr1g0475 1 5846698 5848221 PCT