Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1003 ATGAGTCTAACGGGTACGGAAAGCTCGGAAGAGGGTGCAGGGCATTTGGAGCCTCCAGATCCTGATGTCCTTGAAATTGATCCAACTTGTCGCTACATCAAGTATAAAGAAGTGATCGGCAAAGGAGCCTTTAAAACTGTCTATAAAGCTTTTGATGAAATCAATGGAATTGAAGTTGCATGGAGTCAAGTTCAGATTGACGAAGTGTTACAATCACCAGGTGACTTAGAGAGGTTATATTCTGAAGTGCATCTCTTGAGATCACTAAGGCATAATAACATAGTAAGATTCTATAATTCTTGGATTGATGACAAGCGCAAGACCGTTAATATGATAACAGAGTTGTTTACTTCGGGTAGCCTCAAACAGTATCGTAAAAAACACAAGAAGGTTGACTTGAAGGCTGTTAAAGGATGGGCAAGACAAATTTTAACAGGATTAAACTATCTTCATGGGCACAACCCAGCAATTATACATAGGGATCTGAAATGTGACAACATATTTATTAATGGTCACCAAGGCGAAGTTAAAATTGGAGATTTGGGACTGGCGACTTTCTTGGAGCGAAGTAATGCCAAAAGTGTAATTGGAACCCCGGAGTTTATGGCACCTGAATTGTACGATGAAAATTATAATGAATTAGCTGACATATATTCATTTGGTATGTGTATACTTGAGTTGGTGACTGCTGAGTATCCTTACAGTGAATGCAGAAACTCAGCACAAATATACAAAAAAGTTTCATCCGGTATAAAACCTGTTGCTATTTCTAAAGTGAGAGATCCAGAAACAAAATCATTTATTGAGAAATGTATTGTCCCAGCACCTCAAAGATTGTCAGCAAAGGAACTTCTGATGGACCCCTTTCTTCAACTGAAAAGTTCAACAAAGAGTCCTTTTCCATTGCCAGATATTGTTCTTCCCAAATTGGGAGCCTTTGAAAGCCGCTGTATGGTGTCAGAAGGTCCTGTTAGTACATGTAGTGGAGACATTTCTATAGATGTTGGTGACACCCGTGAGTTGCCTGTGATCACTGTACTTGATAAATCTACTGAAACTGCATCAAGTTCTTCGTGTGTTGAGATAAGGAGGCAAAAGAAAGGTGATATATTCTTTCTAAAAGGTGAAGAAAATGATGAGAAATCTGTATCATTGGTTCTGCGGATATCTGATGAAAGTGGACGAGCTAGAAATATTCATTTCATTTTTTACCTTGACAGTGATACAGCTGTCTCAGTTTCAAGTGAAATGGTTGAGCAACTTGAACTTGCTGATCAGAATGTTAAATTCATCACAGAATTGATAGATTTGTTATTGATGAATTTGATTCCTGAATGGAAACCTTGCATAGCAGTTGATCATTTGATTTCTCCAATGAGCAAAGCCAGTCATGCAAACCACAGAAACTTGGATTTGAAAAAAAGCAAGGGAAGCTCTGAAGTTGTGTCAGGTTCCTCAACTTTGTCTATGAGATCAATTGCAAAAGAAAACTTTGATAACATGGATTTTGATGAAATTTTAGCTCATGAATGCCTTGGTCTTCAAAAAGCAACTAAGACGGATGATTTGTGTTCTGAAATTTCATATGCTTCTGCAACATCAGACTTCTTCACTGACAAATTTTCTATGGTTTCATTCACATCTGCTGAATCAGGATTCGATAGAGGGAGTCGATCCTCGATTGCATCTGAAATTGGAGCATTTGATAAGACTAAGTTTTCAGATATGGAGAGTAATGGCATGAGTTTCTCTGGTCATTTTAATTTTGTTTCCTCTTCGTGTGAATCCAAAGATGATTTGAAAACAGAATTAGAAATGATTGAACAGAGGTTTCAAGAAGCTATTAAAGATTTATCTAAGAGAAGACATCAGGCAATCATGGAGGTTACAAGAAGAATGTCAGAGAAGATAGCATCCTAG 1920 0.376 MSLTGTESSEEGAGHLEPPDPDVLEIDPTCRYIKYKEVIGKGAFKTVYKAFDEINGIEVAWSQVQIDEVLQSPGDLERLYSEVHLLRSLRHNNIVRFYNSWIDDKRKTVNMITELFTSGSLKQYRKKHKKVDLKAVKGWARQILTGLNYLHGHNPAIIHRDLKCDNIFINGHQGEVKIGDLGLATFLERSNAKSVIGTPEFMAPELYDENYNELADIYSFGMCILELVTAEYPYSECRNSAQIYKKVSSGIKPVAISKVRDPETKSFIEKCIVPAPQRLSAKELLMDPFLQLKSSTKSPFPLPDIVLPKLGAFESRCMVSEGPVSTCSGDISIDVGDTRELPVITVLDKSTETASSSSCVEIRRQKKGDIFFLKGEENDEKSVSLVLRISDESGRARNIHFIFYLDSDTAVSVSSEMVEQLELADQNVKFITELIDLLLMNLIPEWKPCIAVDHLISPMSKASHANHRNLDLKKSKGSSEVVSGSSTLSMRSIAKENFDNMDFDEILAHECLGLQKATKTDDLCSEISYASATSDFFTDKFSMVSFTSAESGFDRGSRSSIASEIGAFDKTKFSDMESNGMSFSGHFNFVSSSCESKDDLKTELEMIEQRFQEAIKDLSKRRHQAIMEVTRRMSEKIAS* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1003 639 SMART serkin_6 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1003 639 CDD STKc_WNK 31 290 - -
Apr2g1003 639 ProSiteProfiles Protein kinase domain profile. 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1003 639 MobiDBLite consensus disorder prediction 1 22 - -
Apr2g1003 639 Gene3D Phosphorylase Kinase; domain 1 19 114 - -
Apr2g1003 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Apr2g1003 639 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 5 636 - -
Apr2g1003 639 Gene3D Transferase(Phosphotransferase) domain 1 116 297 - -
Apr2g1003 639 SUPERFAMILY Protein kinase-like (PK-like) 35 291 IPR011009 -
Apr2g1003 639 Pfam Protein kinase domain 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1003 639 Coils Coil 597 617 - -
Apr2g1003 639 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK6-RELATED 5 636 - -
Apr2g1003 639 Gene3D - 381 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1003 Apr-Chr2 16277184 16280228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1003 133 469 MAP Kinase Kinase Kinase AT1G49160 65.487 1.43e-164 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Apr2g1003 Pkinase 9.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1003 K08867 - gmx:121175054 830.476