Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1001 ATGAATATGATGGATTATGAACAATTTGATTACTCATTTAGCCCTCCCTACCTGAATCAACTTCATGAGTGTAACTTAGAAAATGCATTTTCATTTCAGACAGAAGATCTCTCATCACCAAGCACCATCCTGGATGAAATTTTTTATGAAGAGTCAATGGAAGGATTGTTGCAGCAACATACAAAAAACCAAGACTTTGGTTTCATGAATCATGACAAAACAATGGGTCTAGGGAATCAATTATGCCATGGAGTTACCCCAAAAGCCAGGGAAAATGTGCATGTTTCAAGTGAAGAAGAGGGCTCTTATTTAAAGGGAATTCAAGAAGAGCTAATGGAAGACACCAGTTTAGCTGATCTCTTGCTGACAGGAGCTGAAGCTGTTGAAGCACAGAACTGGGTTCTTGCTTCAGAAATAATTGAGAAACTTAACAATTCCTCATCTTTAGAAAATGGTGATAGTATATTGAACAGGTTGGCTCTTTTCTTTGCTAAGGGTCTGTGTTATAAAAGTACAAATGCAAATGCCTCTGAATTTCAGTGTAGTTCTGTTTCAACACAGACAAATGCTTTGTGTGTGTTTCAGATACTCCAAGAACTCTCTCCCTATGTAAAATTTGCTCATTTCACTGCCAACCAAGCAATTTTGGAAGCTACAGAAGGTGCTGAGGATGTTCACATAATTGATTTTGACATCATGGAAGGGATTCAGTGGCCTCCATTGATGGTTGACCTTGCAATGAGGAAGCGTACTACTACTTCACTTAGAGTAACAGCCATCACAGCGGACCAAAGAGGTGCTGCTTCTGTTCAGCAAACAGGAAGAAGGCTTAAAGAGTTTGCTGCCTCTATCAATTTTCCATTCACGTTTGATCAGATAATGATGACAAGGGAAGAAGATTTTCAAAGAGTTGAACTTGGTCAAACACTTATAGTCAACTGCATGATACATCAGTGGATGCCCAATAGGAGTTTCTTATTGGTCAAAACTTTTCTTGATGGTGTCAGAAAATTATCCCCTAAGCTTGTTGTTTTAGTGGAAGAGGAATTATTTAATTTTTCTAGACTCAAATCCATGTCCTTTGTGGAGTTCTTCTGTGAGGCTTTGCATCACTATACTGCACTTTATGATTCCCTTGCTAGTAGTTTATGGGGTAGCCACAAGATGAAGTTGACCCTGATAGAAAAAGAGATTTTAGGACTAAGAATCTTGGACAGTGTGAGGCAGTTTCCTTGTGAAAGAAAGGAGAGAATATTGTGGGAAGAAGGATTGTATTCCTTGAAAGGGTTTAAACGAGTTGCTATGAGCACATGCAATATTTCTCAAGCCAAGTTCTTGGTAAGCCTGTTTGGTGGAGGGTATTGGGTGCAATTTGAGAAGGGTAGGTTGGCTTTGTGTTGGAAGTCAAGGCCTTTGACTACGGCTTCGATCTTGGTACCGACAACTTATCTGAGTGACAAGGTCAAATAG 1470 0.3946 MNMMDYEQFDYSFSPPYLNQLHECNLENAFSFQTEDLSSPSTILDEIFYEESMEGLLQQHTKNQDFGFMNHDKTMGLGNQLCHGVTPKARENVHVSSEEEGSYLKGIQEELMEDTSLADLLLTGAEAVEAQNWVLASEIIEKLNNSSSLENGDSILNRLALFFAKGLCYKSTNANASEFQCSSVSTQTNALCVFQILQELSPYVKFAHFTANQAILEATEGAEDVHIIDFDIMEGIQWPPLMVDLAMRKRTTTSLRVTAITADQRGAASVQQTGRRLKEFAASINFPFTFDQIMMTREEDFQRVELGQTLIVNCMIHQWMPNRSFLLVKTFLDGVRKLSPKLVVLVEEELFNFSRLKSMSFVEFFCEALHHYTALYDSLASSLWGSHKMKLTLIEKEILGLRILDSVRQFPCERKERILWEEGLYSLKGFKRVAMSTCNISQAKFLVSLFGGGYWVQFEKGRLALCWKSRPLTTASILVPTTYLSDKVK* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1001 489 Pfam GRAS domain family 118 476 IPR005202 -
Apr2g1001 489 PANTHER OS12G0162700 PROTEIN 5 479 - -
Apr2g1001 489 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 5 479 IPR005202 -
Apr2g1001 489 ProSiteProfiles GRAS family profile. 108 479 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1001 Apr-Chr2 16271510 16272979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1001 96 476 GRAS Transcription Factor Family AT5G41920 34.336 2.11e-47 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Apr2g1001 GRAS 1.8e-80 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1001 - - gmx:100804613 780.015