Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0999 ATGTATGCTTCTACTTCCTTTACTTCACAACTGTTCCATGACCTTCTGGAGGACTCTCACTCAAGAAAGCTACTCCTTCAAGATCCACTTCACCATTCACTTAACTCAGCCATTTCTCCAGCTTCCATAAACAACTACAATTCAACAGACTCATATTTCAGAGGACATAACTTCGATGCAAATGTTGTCATGATACTCTCAGTCCTACTGTGTGCTGTTGTTTGCTCGCTAGGGTTGAACTCCATCATGAGGTGTGTCTTAAGGTGTTCAAGCATAGTCATCCTTGACCCTCCAAGTGCAAGCAACAATAATAACCCTTCACCCCGACTGGCCAACAAAGGAATCAAGAAGAAAGCCCTTAAGACTTTCCCTACTGTGAGCTACTCAACAGAGTTAAAACTTCCAGGTTTGGACACAGAGTGTGTGATATGCCTCTCAGAGTTCACACATGGTGATAAGGTTCGCATTTTACCAAAGTGCAACCATGGTTTCCATGTTCGTTGCATTGACAAATGGCTAAGTTCACACTCTTCATGCCCCAAGTGCAGACAGTGCCTCATTGAGACTTGTAGAAAAATTGTTGGATCACAACAACCACCTGTGCCACAAACTATTATAAGGATCGAACCGCTAGAACATGAAGGTTTTGAGCGTAACTATAGGGAAGTATGCTAG 675 0.4296 MYASTSFTSQLFHDLLEDSHSRKLLLQDPLHHSLNSAISPASINNYNSTDSYFRGHNFDANVVMILSVLLCAVVCSLGLNSIMRCVLRCSSIVILDPPSASNNNNPSPRLANKGIKKKALKTFPTVSYSTELKLPGLDTECVICLSEFTHGDKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCRKIVGSQQPPVPQTIIRIEPLEHEGFERNYREVC* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0999 224 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 224 - -
Apr2g0999 224 CDD RING-H2_PA-TM-RING 140 183 - -
Apr2g0999 224 Pfam Ring finger domain 140 183 IPR001841 -
Apr2g0999 224 SUPERFAMILY RING/U-box 119 189 - -
Apr2g0999 224 PANTHER RING-H2 FINGER PROTEIN ATL78 1 224 IPR044602 GO:0016567|GO:0016740
Apr2g0999 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 187 IPR013083 -
Apr2g0999 224 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Apr2g0999 224 SMART ring_2 141 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0999 Apr-Chr2 16248996 16249670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0999 58 187 C3H Transcription Factor Family AT3G10910 54.135 1.69e-41 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0999 K19040 - gmx:100527126 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0999 2 16248996 16249670 Apr2g0999 2 16248996 16249670 ECH
Apr2g0999 2 16248996 16249670 Apr1g0479 1 5886141 5887091 ECH
Apr2g0999 2 16248996 16249670 Apr1g0479 1 5886141 5887091 PCT