Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0997 ATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTCAAGGCAGGGTTTGCTGGTGATGATGCTCCCAGGGCTGTGTTTCCCAGTATTGTTGGCCGACCACGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATGCCTATGTGGGTGATGAAGCTCAATCAAAAAGAGGTATTCTGACTCTGAAGTACCCCATTGAACATGGTATAGTCAGCAACTGGGATGACATGGAAAAGATCTGGCATCACACATTTTATAATGAACTTCGTGTTGCTCCTGAGGAGCACCCGGTGCTTCTCACGGAGGCTCCTCTCAACCCAAAGGCCAACAGAGAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCCTGTATGCAAGTGGTCGCACAACTGGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTACCCCATGCCATCCTTCGTTTGGACCTTGCTGGTCGTGATCTAACTGATCATTTGATGAAGATCCTCACCGAGAGAGGGTACATGTTCACTACCTCTGCTGAGCGAGAAATTGTTCGTGACATGAAGGAGAAGCTTGCTTATGTTGCCTTAGATTATGAGCAAGAACTAGAGACTGGAAAGAGCAGTTCTTCAGTTGAGAAAAGCTATGAGCTTCCTGATGGACAAGTTATCACAATTGGAGCAGAGAGATTCCGTTGCCCAGAAGTCCTTTTCCAGCCATCTATGATTGGAATGGAAGCTGCTGGAATTCACGAGACTACCTACAACTCTATCATGAAGTGTGATGTGGATATCAGAAAGGATCTGTATGGCAACATTGTTCTTAGTGGTGGCTCTACTATGTTCCCTGGTATTGCAGACAGGATGAGCAAGGAGATCACTGCTCTTGCTCCTAGCAGCATGAAGATTAAGATGGCTCGTACGAAGCAAACAGCTCGGAAATCCACTGGCGGGAAGGCTCCGCGGAAGCAGCTGGCGACCAAGGCGGCTCGGAAGTCAGCTCCGGCGACTGGCGGAGTGAAGAAACCACACAGGTTCAGGCCGGGAACCGTGGCTCTGAGGGAGATTCGGAAGTATCAGAAGAGCACCGAGCTTCTGATCCGAAAGCTCCCGTTTCAGCGTTTGGTTCGCGAAATCGCTCAAGATTTCAAGACGGATCTGAGGTTCCAGAGCAGTGCTGTTTCGGCTCTTCAGGAAGCCGCTGAGGCTTACTTGGTTGGCCTCTTCGAAGACACTAACCTCTGCGCCATTCACGCCAAGAGAGTCACCATCATGCCCAAGGATATTCAACTCGCTCGAAGGATTAGAGGCGAGAGGGCTTAG 1401 0.4946 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYMFTTSAEREIVRDMKEKLAYVALDYEQELETGKSSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0997 466 Gene3D - 1 153 - -
Apr2g0997 466 Pfam Actin 5 340 IPR004000 -
Apr2g0997 466 Pfam Core histone H2A/H2B/H3/H4 331 462 IPR007125 GO:0003677
Apr2g0997 466 SUPERFAMILY Histone-fold 332 463 IPR009072 GO:0046982
Apr2g0997 466 SMART h35 364 466 IPR000164 GO:0000786|GO:0003677|GO:0030527
Apr2g0997 466 MobiDBLite consensus disorder prediction 335 371 - -
Apr2g0997 466 PANTHER ACTIN 1 333 IPR004000 -
Apr2g0997 466 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Apr2g0997 466 PRINTS Histone H3 signature 333 347 IPR000164 GO:0000786|GO:0003677|GO:0030527
Apr2g0997 466 PRINTS Histone H3 signature 347 361 IPR000164 GO:0000786|GO:0003677|GO:0030527
Apr2g0997 466 PRINTS Histone H3 signature 364 385 IPR000164 GO:0000786|GO:0003677|GO:0030527
Apr2g0997 466 PRINTS Histone H3 signature 388 405 IPR000164 GO:0000786|GO:0003677|GO:0030527
Apr2g0997 466 PRINTS Histone H3 signature 410 428 IPR000164 GO:0000786|GO:0003677|GO:0030527
Apr2g0997 466 PRINTS Histone H3 signature 428 444 IPR000164 GO:0000786|GO:0003677|GO:0030527
Apr2g0997 466 PRINTS Histone H3 signature 444 465 IPR000164 GO:0000786|GO:0003677|GO:0030527
Apr2g0997 466 PANTHER ACTIN 1 333 - -
Apr2g0997 466 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Apr2g0997 466 ProSitePatterns Histone H3 signature 2. 397 405 IPR000164 GO:0000786|GO:0003677|GO:0030527
Apr2g0997 466 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Apr2g0997 466 Gene3D Actin; Chain A, domain 4 184 270 - -
Apr2g0997 466 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Apr2g0997 466 Gene3D - 154 320 - -
Apr2g0997 466 SUPERFAMILY Actin-like ATPase domain 149 333 IPR043129 -
Apr2g0997 466 SMART actin_3 7 363 IPR004000 -
Apr2g0997 466 ProSitePatterns Histone H3 signature 1. 345 351 IPR000164 GO:0000786|GO:0003677|GO:0030527
Apr2g0997 466 Gene3D Histone, subunit A 332 466 IPR009072 GO:0046982
Apr2g0997 466 Gene3D Actin; Chain A, domain 2 34 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0997 Apr-Chr2 16229445 16234403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0997 1 331 Cytoskeleton Gene Families AT5G09810 97.281 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0997 K10355 - gmx:100777460 660.603