Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0992 ATGGATTCGGAGGATTTCCGATCCATATTGGAGAGTGCAGGCGTCGACGTTTGGGTGTTGATGGACGCGGCAATCGCCGTGGCTTCCGCCGATTACGCCGACGAATTGAAACGCCGGAGAGATGGAATCGTGGAGCGTCTATACACTGCGGCTTCGGCGCCGCCTCGGTGCCAGAACTGCGATGCCGGCGATGGAGAAATCAAGAAGCGGAACAGTCCATCAACGGAGGACGAGGAGGAAGAAGATGAGGAAAAGGATCCTTATGGAGGCTTGTTCGATGACGAGCAGAAGAGGATTCTAGAGATTAAAGAGCAACTCGAAGACCCTCACCAGTCTGAAGATTCGTTGGTGGAGCTGTTACAGAATCTGGCAGATATGGATATTACATTCCAAGCGTTAGAAGAGACTGACATTGGAAGGCACGTGAATCGGTTACGGAAGCATACGTCTAATGATGTTAAGAGATTGGTGAAGCTACTTGTCAGGAAGTGGAAGGAAATTGTAGATGAATGGGTGGTGAAGTTGAAGACACCGGGAGCACCGGGTACTGCTGTAATGGCTGATGAAGACTGGCCCCAGCAGAAAACTCCACAAAATGAGCATCGTCAGATTCCTGATTTTGGGTACTCACCAAACCCACACAATGGGATTTTTGGGTCAGAGCGCATCAATACTGAAGCGCAACAAAAGCCAAAAGCAATTCCTCGCAAAGAAGCTCCCCCAAAATCCGCGCCATCACCATCAGTCCCTGCTCCAGCTCCTCCTCAAAACAGACAGAGAGAGAGCAATTTTGATTCGGAGAGACTTGCCTCGGCAAGAAAACGGCTTCAAGAGAATTACAAAGAGGCTGCAAATGCCAAAAAACAAAGAACTATTCAGGTGATGGACCTCCATGAATTACCAAAACCCAAGAATGCCTTCTTTGGAAAAAACAAAGGCGGCAGCGGTCAGGGAAGGCATTGGTGA 966 0.4928 MDSEDFRSILESAGVDVWVLMDAAIAVASADYADELKRRRDGIVERLYTAASAPPRCQNCDAGDGEIKKRNSPSTEDEEEEDEEKDPYGGLFDDEQKRILEIKEQLEDPHQSEDSLVELLQNLADMDITFQALEETDIGRHVNRLRKHTSNDVKRLVKLLVRKWKEIVDEWVVKLKTPGAPGTAVMADEDWPQQKTPQNEHRQIPDFGYSPNPHNGIFGSERINTEAQQKPKAIPRKEAPPKSAPSPSVPAPAPPQNRQRESNFDSERLASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKNAFFGKNKGGSGQGRHW* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0992 321 MobiDBLite consensus disorder prediction 54 91 - -
Apr2g0992 321 CDD TFIIS_I 96 169 - -
Apr2g0992 321 ProSiteProfiles TFIIS N-terminal domain profile. 94 171 IPR017923 -
Apr2g0992 321 MobiDBLite consensus disorder prediction 238 254 - -
Apr2g0992 321 Coils Coil 266 293 - -
Apr2g0992 321 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 93 178 IPR035441 -
Apr2g0992 321 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 97 172 IPR035441 -
Apr2g0992 321 MobiDBLite consensus disorder prediction 298 321 - -
Apr2g0992 321 Coils Coil 116 136 - -
Apr2g0992 321 Pfam TFIIS helical bundle-like domain 119 168 IPR017923 -
Apr2g0992 321 MobiDBLite consensus disorder prediction 183 270 - -
Apr2g0992 321 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 321 - -
Apr2g0992 321 SMART TFS2_5 99 170 IPR003617 GO:0005634
Apr2g0992 321 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 321 IPR044790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0992 Apr-Chr2 16177786 16180951 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Apr2g0992 Med26 5.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0992 - - gmx:100796457 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0992 2 16177786 16180951 Apr1g0490 1 5986372 5989976 PCT