Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0943 ATGGGCAGAAAGAAAGAGAAAGAGAAAGAGAAAAAAGGGAGCGACAGCGAAGACGACGACGTATTCTACTATCGGTTCAGCAGTGCATCAACATCCAACCCAAACCAAACCCAATCCAAAGGGAAAGGGAACCAAAACAAGGGATCACAGTCACAATCACAAGCCTTAGCTCCCTCCAAATCAACGTTGTACGTATCCAACATCGACTACTCCCTTACAAACTCCGATCTCCACACTCTCTTCTCCACCTTCGGCCGCATCGCGCGTGTCACAGTCCTCAAAGACCGCCACACGCGCCTTAGCCGCGGCGTCGCCTTCATCCAGTTCGTTTCCCGCCACGACGCCCGCACCGCCGCCTCTCAGATGCACCGCAAGGTCCTCAACGGCCGCACCCTCACCGCCTCCATCGCCGCCGACAACGGACGCGCCCCCGAATTCATCCGCAAGCGCGTGTATCGCGACACCGGCAAGTGCTTCGAGTGCGGCACCTCCGGCCACCTCTCCTACGACTGTCCCAGGAATCAGTTGGGCCCACGCCAGCGCCCCCAGCCCAAGCGTGGCCGTAGAGGGCTCGGCCGCGACAACGGCGACGACGAAGGCGGTGAATCTGAAGGTGGCGGTGATGGTGGCGGGGGAGAGCGGTTTGAGGATGATAATTGGGCCTCTGTTGTGGATGATGGTGCGGATGAGAGGCTGTTGGCGAGGAACTATGATGTGGAAGCTGTGGGTGCCACGAAGAAGAAGAAGAAAGGGAAGAAAGCAGGGTACTTTAGTGATGAGAGCGACGATGACGATGATGGTTGA 804 0.5771 MGRKKEKEKEKKGSDSEDDDVFYYRFSSASTSNPNQTQSKGKGNQNKGSQSQSQALAPSKSTLYVSNIDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFIQFVSRHDARTAASQMHRKVLNGRTLTASIAADNGRAPEFIRKRVYRDTGKCFECGTSGHLSYDCPRNQLGPRQRPQPKRGRRGLGRDNGDDEGGESEGGGDGGGGERFEDDNWASVVDDGADERLLARNYDVEAVGATKKKKKGKKAGYFSDESDDDDDG* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0943 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 139 IPR000504 GO:0003723
Apr2g0943 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 132 IPR000504 GO:0003723
Apr2g0943 267 SUPERFAMILY Retrovirus zinc finger-like domains 141 174 IPR036875 GO:0003676|GO:0008270
Apr2g0943 267 CDD RRM_ZCRB1 60 137 IPR034219 -
Apr2g0943 267 ProSiteProfiles Zinc finger CCHC-type profile. 157 173 IPR001878 GO:0003676|GO:0008270
Apr2g0943 267 SMART rrm1_1 62 135 IPR000504 GO:0003723
Apr2g0943 267 MobiDBLite consensus disorder prediction 169 267 - -
Apr2g0943 267 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 14 265 - -
Apr2g0943 267 Gene3D - 1 145 IPR012677 -
Apr2g0943 267 Pfam Zinc knuckle 156 172 IPR001878 GO:0003676|GO:0008270
Apr2g0943 267 Gene3D - 148 189 - -
Apr2g0943 267 MobiDBLite consensus disorder prediction 1 58 - -
Apr2g0943 267 SUPERFAMILY RNA-binding domain, RBD 50 148 IPR035979 GO:0003676
Apr2g0943 267 SMART c2hcfinal6 157 173 IPR001878 GO:0003676|GO:0008270
Apr2g0943 267 MobiDBLite consensus disorder prediction 1 22 - -
Apr2g0943 267 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 14 265 IPR044598 GO:0000398|GO:0005689
Apr2g0943 267 MobiDBLite consensus disorder prediction 209 245 - -
Apr2g0943 267 MobiDBLite consensus disorder prediction 25 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0943 Apr-Chr2 15411423 15413647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0943 61 137 Eukaryotic Initiation Factors Gene Family AT4G34110 33.766 5.41e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0943 K13154 - gmx:100814914 300.056