Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0927 ATGGCATCACACGGTTTGGAACGTTGTCCCTCAGAAGCCTCTAACATATCTGCCACCTCCGAAGACATTTCCCTAAACGATGGTGTTGAAGAAGAGAAGAATGATGTGATTACAATGAAGGAGAAGGATGGTACATCTGAAAAAGGTCAAGCTTCAAATTCCAATTCCCATGTAATGTTGGATTTTGTGAAGCTCTCCAATGATGATTCAATTCATGGGTCAAAGGTGGAATTGAATTTTTTCAATCCAAAAAACGTGGTTAGTTCATCTTCTTTTAGGGCTAATAATACTAACGAAAAAGATGAGAGTAATGAAGAGAAAACACCAGAGGCAAAGACTTTTTCATGCAACTTTTGTAAAAGAGAGTTCTCTTCTTCACAAGCTTTGGGAGGGCACCAAAATGCTCACAAGCAAGAGCGTGCCCTTGCAAAGCGTCGCCAAGGGATTGATGTAGATGCTTTTGGACACCCTCATTTTCCCTATTATTCTTATCCTACGCACCCCTTTTATGGATCCTATAATCGCACACTTGGGGTTCGAATGGAGTCTATGGTTCACAAGCCATCTTATCATTGGACCTCACCCTTGAGGTTTGGTCAAGGGTGGCTAAGGCAAGAGATGTTAAACCCATCTCTTGTGAGGATGGAGGGTTTGCATGCAAATAATGAAATTGGAAATTTTAGGAGTGGTGCAACTTTGAGGGCAGAAGATGATCGTGGTGCTGTTGGAAATATTCCTTTCCTTGGAGATTCTTCTACAAATGTTGCTACCAAATCAAACTCATCCATGGACAAGCCAAAATTGACTAACATGGGTGATCATTATTCCAAGCAAGAGGAAACATCCAATCCTGATTCTTCTGGGATTGATTTGTCACTTAAGCTTTAA 888 0.4099 MASHGLERCPSEASNISATSEDISLNDGVEEEKNDVITMKEKDGTSEKGQASNSNSHVMLDFVKLSNDDSIHGSKVELNFFNPKNVVSSSSFRANNTNEKDESNEEKTPEAKTFSCNFCKREFSSSQALGGHQNAHKQERALAKRRQGIDVDAFGHPHFPYYSYPTHPFYGSYNRTLGVRMESMVHKPSYHWTSPLRFGQGWLRQEMLNPSLVRMEGLHANNEIGNFRSGATLRAEDDRGAVGNIPFLGDSSTNVATKSNSSMDKPKLTNMGDHYSKQEETSNPDSSGIDLSLKL* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0927 295 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 6 295 - -
Apr2g0927 295 MobiDBLite consensus disorder prediction 26 47 - -
Apr2g0927 295 SUPERFAMILY beta-beta-alpha zinc fingers 111 141 IPR036236 -
Apr2g0927 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Apr2g0927 295 PANTHER ZINC FINGER PROTEIN JAGGED 6 295 IPR045320 GO:0003700
Apr2g0927 295 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Apr2g0927 295 MobiDBLite consensus disorder prediction 1 53 - -
Apr2g0927 295 MobiDBLite consensus disorder prediction 249 267 - -
Apr2g0927 295 MobiDBLite consensus disorder prediction 10 24 - -
Apr2g0927 295 Gene3D Classic Zinc Finger 88 152 - -
Apr2g0927 295 MobiDBLite consensus disorder prediction 89 110 - -
Apr2g0927 295 MobiDBLite consensus disorder prediction 249 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0927 Apr-Chr2 15064056 15064943 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0927 11 215 C2H2 Transcription Factor Family AT5G10970 35.047 6.12e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr2g0927 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0927 - - gmx:102663393 366.311