Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0916 ATGTCCACGGCGGCTGCGCCATCTTCCGCCGCCACCACCACTGCTACAACCGGCGTCGGTCTCGGCTACGGCATCGCCATCGCCGTCAGCATCCTCGTCCTCATCTCCACCATCATGCTCGCCTCCTACGCCTGCGTCAGAATCAAGGCCAATGACCGACGCGGCACCTATTACAGCAACAATCACAATGATAACCATAACAGAGAAAACATTACCCATGATTCGGGTGGGCCTGTGATTGTCATGGGCTTGGAAAAGTCCATGGTTGACGCCTACCCGAAGATGGTCATTGGAGAGAGCAGGAGGCTACCCAAGCCCAATGAAGGCCCATGTGCCATCTGTTTGTCTGAGTATCTTCCTCAAGAGACGATACGGTGCGTTCCGGACTGTCACCATTGCTTCCATGTCGAGTGTGTGGACGAGTGGCTGCGGACGAGTGCCACGTGTCCGCTGTGTCGGAACTCTCCCGCTCCTACGCCGGCGGCCACTCCTCTGTCGGAACTGGTTCCTCTGGCTTTCCACGCCAGGTGA 531 0.5763 MSTAAAPSSAATTTATTGVGLGYGIAIAVSILVLISTIMLASYACVRIKANDRRGTYYSNNHNDNHNRENITHDSGGPVIVMGLEKSMVDAYPKMVIGESRRLPKPNEGPCAICLSEYLPQETIRCVPDCHHCFHVECVDEWLRTSATCPLCRNSPAPTPAATPLSELVPLAFHAR* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0916 176 CDD RING-H2_EL5_like 111 153 - -
Apr2g0916 176 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 159 - -
Apr2g0916 176 Pfam Ring finger domain 111 153 IPR001841 -
Apr2g0916 176 SUPERFAMILY RING/U-box 105 159 - -
Apr2g0916 176 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Apr2g0916 176 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 21 159 - -
Apr2g0916 176 SMART ring_2 111 152 IPR001841 -
Apr2g0916 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 158 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0916 Apr-Chr2 14766034 14766657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0916 17 176 C3H Transcription Factor Family AT5G07040 57.407 1.07e-65 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0916 - - lja:Lj3g3v0787250.1 240.35