Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0907 ATGCCCACCGAGAATTCCTTCGCCGACCACAAGCTCTGCGGTTTTCTCTGTGCGGTTCTCACAGTTACTTCTCCGCAACGCGACAACGACCCAGGCTTCACCGAACTCTGCGAACCCTTCAGCGACGGGGGCGAGGTCGCGTTCCGGACCCAAAGCGGCGTCGTTTTGGGTGCGGTGGATAAGGATTTGTCAGAATGCGGAACCTCGAAAACTAAGAGGGTGAAGAAGATTGGGATGGTGAATGGGAGCGTCAGCGTGGTTCACCAGCTTCGTGCGTTGGTTACACGCAAGTGTGTGAAGGTCGATGCGCGCGTGGTGTGCGTTGAGGTGCCTAGGGTTGTTGTTTTGTTCGACGTCTACCTCCCTATTCAGGTGTGGAGTGGCTGGCAGTTCCCGCGATCAGGACCCGTTGCCGCCGCTGTTTTTCGCCATTTGAGCTGTGACTGGGATGAGAGAAGTTCAATGCTTTCTTATCCAGACTATTGTAGGAAGACTCGTGGAGTAAATGAGAGCATTTGGAACCTTTCTGATTGTCATGTACTTGGTTGCAATCTTCATTCCCATGCAAGCAATTCTTCAAGGAAAAGGCTATTCGAACTTCATGAAATTTTTAAGACAGTACCTGGTGTAATAAAACAAGAGAAGTTTAATAGGTCCAAGATAATACCTATCGATAACACTTGCAGATCAGGGATTTGGGAGATATCTGATGATATTTTAACTAGAATTTTAGCTTCCCTGGGCCCAATGGACCTCACTAAGGTTTCTGCAACATGCCGTCATCTAAAATCCTTGGCTGCTTCAGTAATGCCTTGTACAAGGTTAAATTTGTTTCCTCATCAGCAGGCAGCAGTTGAGTGGATGTTGTATCGTGAGCGAGATGCTGAAGTTTTGCCACATCCTTTATATGTAACTCTCTCAACTGACGATAGCTTTAGTTTCCATGTAAATTCTGTATCTGGTAAAATTGTCACTGGGGAAGCACCCATCATCAGAGATTTTCGTGGTGGAATGTTTTGTGATGAGCCTGGCTTGGGTAAGACTGTAACAGCTCTCTCTCTTATTGTGAAGACCCAAGGTACATTGGCAGACCCACCTGATGGGGCACAAGTAGTCTGGTGTCAACATAATGGTAATCAGAAATGTGGCTATTATGAGATCAGTGGTAATAACATCACTGGATGTAATACCTTGGGTAAGAGGGATGTGTGCCAAGATACCAGTAGAAATAATGAGAACCATGATTACTCCTCCAAAAGAGCCAGATTGGCAGGTCATCAGCAAATCAGTAAACTTCATGATTCATGTTCCAGGGAAGAGAGCAAATCACCTGTAGATGCATGCTTTGAGGAATCTATGCATGCAGGTCGGTTCACTAGGAGTTTGAGCCATATAAAGAAAAATCTAAATTTCTCAAATGAAGAGGAATCTATGATTTTCAAGGAACAAGACATAGGCAAAGGATTAATTAAAGCAAAGCAGGCATCGGGTGTTGCATCTCATGCATCACAAAACAAGCCAATTGATACCTCCTGTGGACAGAATTACAAGTGGCCTGGGAAGCATAAAGGCAACTGTTTGGAGCACAATGATACATGGATTCAGTGTGATGCTTGTCACAAGTGGCGAAAGCTTGCAGACAATAGTATGGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGAACACTGACCCTTTGTATCAGAGTTGTAGTGTCCCTGAACAATATTTTCAGAATACCTGTAAGATAACACATTTGCCAGGATTTCACTTGAAAGGAACTCCTGGTGGTGAGAAACAAAATGTTTCATTTTTCACTAGTGTACTAAAGGAGCACTACACATTGATAAATTCTCAGACAAAGAAGGCCTTGACTTGGTTGGCTGAAATTTCAGCAGACAAGTTAGCTGGAATGGAAACAAATGGCATAAGAGGTCCTATTTTAAACACTTGTACTACGTCTAATGGATATTTTAATGCATTTCATAAAATATTTCAAGCATTTGGCCTCTTAAAGAAAGTAGAGAAAGGTATATGCAAGTGGTACTATCCACAAAATCTTAACAATTTGACTTTTGATGTGGCTGCGCTTGGCATGGCTCTCCATGAGCCATTAGATTTGGTTAGGTTATACTTGTCAAGAGCAACCCTGGTAGTTGTTCCTGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTGAGGCCTGGCCAATTGCGGGTTTATGTTTGGACTGATCATCGTAAGCCATCTGCTCATTGTCTCGCTTGGGATTATGATGTTGTCATCACTACTTTTAGTCGTTTGAGTGCAGAGTGGGGACCACGTAAGAAGAGTGCTTTGATGCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGGCACACTCTTGGTTCAAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCATTGTTTGCCTCTAATCGATGGATACTAACAGGGACTCCAACACCTAACACACCTAACAGCCAACTTCCACATCTACAACCATTGCTAAGGTTCCTTCATGAAGAAGCTTATGGATTGGATCAAAAGTCATGGGAAGCTGGTGTGCTTAGGCCATTTGAGGCAGAGATGGAGGAAGGAAGGTCTCGTCTGTTACATTTACTTCACAAATGCATGATTAGTGCAAGAAAGATAGATTTACAAAGCATTCCACCATGCATCAAGAATGTTGTTTTTCTAGATTTTAATGAGGAGCATGCTAGAAGTTACAATGAATTGGTGCTCACAGTTCGGCGTAATATATTGATGGCTGATTGGAATGATGCTTCACATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAATTTAGAAGTGCAACTATAAAAAATGTCAGGCTTTCATGTTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAAGAAACAATGGATATATTAGTACAAAGTGGTCTAGATTCTACTTCAGGAGAGTATGCCTCCATAAGATATAATCTCTTGTATGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGCCGCCTCCCTCTGATTACACCATGTCGGCATCTGTTGTGCCTTGATTGTGTTTCTATAGACAATACAAAGTGCACTTATCCTGGCTGTAGTAAATTATATGAGATGCAGAACAGACTTCCTCGACCTGAAAATCCTAAACCAAAGTGGCCTGTACCCAAAGATCTTATTGAACTACAACCTTCATATAAGCAGGATAATTGGGATCCTGATTGGCAATCAACATCTAGTAGTAAAGTCTCCTATCTCATCCAAAGGTTGAAAGCTTTGCAAGGAACCAATAAAGAGACAAGCTTCGATATGGACAATAGCAATGATGAGATGCATATGGAGAATAGTTTCTATATGCATAGAAGAGATGACAAATCACCGTTCAAGGAATGTTCTATAAGTAGCTCTAAGATCAATTTGAATCCTGAGAAAGTTCTGATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTATTGCTGGTATCAAATTTACTGGAATGTATAGCCCAATGCATTCCAGCAACAAGAAGAAGTCATTAGCCATGTTCCAGCATGATTCTAGTTGTATGGCCCTTCTAATGGATGGAAGTGCGGCATTGGGTCTTGACTTGAGTTTTGTTACACGTGTGTTTTTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCTCATCGCATGGGTGCTTCTCGTCCTATTCACGTGGAAACATTAGCAATGCGCGGTACAATTGAAGAGAAAATGGTAGAATTTTTACAGGATGCTGATAAATTTCAAAGATTGCCAATTAAAGATGTTGCAAAATCTGAAGATGATAGTGGGGGACGAGGATATCGATCATTACATGATTTTGCTGAAAGCAGTTATCTACTGAAACTTAGATTTGTTTATACTAATTCAGAAACTCTACAAGATATTTGA 3984 0.4154 MPTENSFADHKLCGFLCAVLTVTSPQRDNDPGFTELCEPFSDGGEVAFRTQSGVVLGAVDKDLSECGTSKTKRVKKIGMVNGSVSVVHQLRALVTRKCVKVDARVVCVEVPRVVVLFDVYLPIQVWSGWQFPRSGPVAAAVFRHLSCDWDERSSMLSYPDYCRKTRGVNESIWNLSDCHVLGCNLHSHASNSSRKRLFELHEIFKTVPGVIKQEKFNRSKIIPIDNTCRSGIWEISDDILTRILASLGPMDLTKVSATCRHLKSLAASVMPCTRLNLFPHQQAAVEWMLYRERDAEVLPHPLYVTLSTDDSFSFHVNSVSGKIVTGEAPIIRDFRGGMFCDEPGLGKTVTALSLIVKTQGTLADPPDGAQVVWCQHNGNQKCGYYEISGNNITGCNTLGKRDVCQDTSRNNENHDYSSKRARLAGHQQISKLHDSCSREESKSPVDACFEESMHAGRFTRSLSHIKKNLNFSNEEESMIFKEQDIGKGLIKAKQASGVASHASQNKPIDTSCGQNYKWPGKHKGNCLEHNDTWIQCDACHKWRKLADNSMANSSAAWFCSMNTDPLYQSCSVPEQYFQNTCKITHLPGFHLKGTPGGEKQNVSFFTSVLKEHYTLINSQTKKALTWLAEISADKLAGMETNGIRGPILNTCTTSNGYFNAFHKIFQAFGLLKKVEKGICKWYYPQNLNNLTFDVAALGMALHEPLDLVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRVYVWTDHRKPSAHCLAWDYDVVITTFSRLSAEWGPRKKSALMQVHWFRIILDEGHTLGSSLNLTNKLQMAISLFASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEEAYGLDQKSWEAGVLRPFEAEMEEGRSRLLHLLHKCMISARKIDLQSIPPCIKNVVFLDFNEEHARSYNELVLTVRRNILMADWNDASHVESLLNPKQWKFRSATIKNVRLSCCVAGHIKVTHAGEDIQETMDILVQSGLDSTSGEYASIRYNLLYGGHCVRCKEWCRLPLITPCRHLLCLDCVSIDNTKCTYPGCSKLYEMQNRLPRPENPKPKWPVPKDLIELQPSYKQDNWDPDWQSTSSSKVSYLIQRLKALQGTNKETSFDMDNSNDEMHMENSFYMHRRDDKSPFKECSISSSKINLNPEKVLIFSQFLEHIHVIEQQLTIAGIKFTGMYSPMHSSNKKKSLAMFQHDSSCMALLMDGSAALGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEKMVEFLQDADKFQRLPIKDVAKSEDDSGGRGYRSLHDFAESSYLLKLRFVYTNSETLQDI* 1328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0907 1327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 710 884 IPR027417 -
Apr2g0907 1327 SMART ultradead3 273 856 IPR014001 -
Apr2g0907 1327 Gene3D - 1065 1310 IPR027417 -
Apr2g0907 1327 ProSitePatterns Zinc finger RING-type signature. 1023 1032 IPR017907 -
Apr2g0907 1327 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1143 1295 IPR001650 -
Apr2g0907 1327 SMART helicmild6 1167 1249 IPR001650 -
Apr2g0907 1327 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 37 1308 - -
Apr2g0907 1327 Pfam Helicase conserved C-terminal domain 1150 1249 IPR001650 -
Apr2g0907 1327 Gene3D - 693 889 IPR038718 -
Apr2g0907 1327 Gene3D - 523 576 - -
Apr2g0907 1327 PANTHER OS01G0952200 PROTEIN 37 1308 - -
Apr2g0907 1327 ProSiteProfiles Zinc finger CW-type profile. 527 578 IPR011124 GO:0008270
Apr2g0907 1327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 1305 IPR027417 -
Apr2g0907 1327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 269 358 IPR027417 -
Apr2g0907 1327 Pfam CW-type Zinc Finger 532 575 IPR011124 GO:0008270
Apr2g0907 1327 SUPERFAMILY F-box domain 227 268 IPR036047 GO:0005515
Apr2g0907 1327 CDD DEXDc_SHPRH-like 704 886 - -
Apr2g0907 1327 CDD SF2_C_SNF 1138 1259 - -
Apr2g0907 1327 Pfam SNF2-related domain 280 944 IPR000330 GO:0005524|GO:0140658
Apr2g0907 1327 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 680 845 IPR014001 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0907 715 1269 RAD5 or RAD16-like Gene Family AT5G22750 25.546 2.37e-43 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr2g0907 SNF2_N 2.7e-95 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0907 - - gmx:100803102 2271.89