Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0891 ATGGGTCGTGCAAGAACAACATTGAAACGCATCTCAAAGGAGGGACTTCGAAAATCAACTTTCAAGCAAAGAAAGAAGGGACTAATGAAGAAAATCTCTGAATTTTGCACCATGTGTGGAGCTGAAGCTTGCTTCATTGTGTATGATGATAACAATGGTAATGTTGAACCAATGACATGGCCTGAAGACCCAACAGTGGTACATTCCATGATTGAAAAGTATGAGAGTCAAAAGAATGAGAAACCCCCCAAGACATTCAACATTGAAGACTTTTTTGAGAATAGAAAGAACATGCTTGAAGCTGAAATTTCCAGGGTGAAGAAAGAGATCACTAAGACCAAGTATCCAACTAAGGATCAAAGTTTTAGTAACCTTGGAGAGGAGCAATTAAAGGCCTTCATTGATATATTGGATGCTAAGATTGGAGCATGTGATCGTAGAATTAGCTTGTTGAAAAATATGCATGAAAGTGAAGTCATGCAAAATATGGCTCAAAAGGGTGCTACCTCCTCCCACCCAAGTCAACTCAATTTAGTGCAAAACATCAATCAAAGCCAACTTATCCCTACCCCTATGAGGCAACTTAATGATACTAATGGGATGACAAATTTTACCAATTCAACAATCCAAGTTCATGGAGCTTGCTTTCATAGAACTAACATGTTGGCAAATTTGCAACAAAGTGATGCTTGTTTTAGTTTCATGCCAAACATGGCTCAAGAAAGTGTTCCCTCCTCACTTGGAAGCCAACTCAATTGCATGCAGAACATCTCTACAAGCCAACACAACCTTGAAACTTTGAAGCCTTTAGATTCAACTAATAAACTCGGTGAATCTAGTACGGACTTTGCTAATCAATTGGGTGAATTTCAGCATTGTGTTGATGAACCTATTGAGATTGATGATTGGTTCAATCAACTAGGTGGTGGTGATCTTGAATCTGTTTTGCAGAATATTCATTTTCAATCACAAAATTAG 978 0.3814 MGRARTTLKRISKEGLRKSTFKQRKKGLMKKISEFCTMCGAEACFIVYDDNNGNVEPMTWPEDPTVVHSMIEKYESQKNEKPPKTFNIEDFFENRKNMLEAEISRVKKEITKTKYPTKDQSFSNLGEEQLKAFIDILDAKIGACDRRISLLKNMHESEVMQNMAQKGATSSHPSQLNLVQNINQSQLIPTPMRQLNDTNGMTNFTNSTIQVHGACFHRTNMLANLQQSDACFSFMPNMAQESVPSSLGSQLNCMQNISTSQHNLETLKPLDSTNKLGESSTDFANQLGEFQHCVDEPIEIDDWFNQLGGGDLESVLQNIHFQSQN* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0891 325 Coils Coil 89 109 - -
Apr2g0891 325 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Apr2g0891 325 PANTHER PROTEIN, PUTATIVE-RELATED 3 288 - -
Apr2g0891 325 Gene3D - 14 101 IPR036879 GO:0003677|GO:0046983
Apr2g0891 325 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Apr2g0891 325 SUPERFAMILY SRF-like 1 79 IPR036879 GO:0003677|GO:0046983
Apr2g0891 325 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr2g0891 325 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr2g0891 325 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr2g0891 325 PANTHER MADS BOX PROTEIN 3 288 - -
Apr2g0891 325 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Apr2g0891 325 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0891 Apr-Chr2 13981567 13982544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0891 1 226 Type I MADS-box Gene Family AT5G55690 29.167 9.63e-20 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr2g0891 SRF-TF 2.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0891 - - ccaj:109809010 313.538