Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0862 ATGGGTGAAGCTATGGAAAGTGAAGAAATACCCAAATACAGAGATATAAGACGCTATTTCTGCAAATATTGCGGCATCTGTAGGTCCAAAAAAACCATCATCACTTCTCACATCAATTCGCACCACAAGGAGGAGGTAGAAAAAGAAAGAGAAGAGAAAGATCCTGAAGCAGGGGCTGTGAAATCCAACACTTGTGAGGAATGTGGTGCTACTTTCAAAAAACACGCCTATTTGTTGCAGCATATGCGAAGTCATTCGCTTGAGCATTGGATCCCAGACAAAGAACTCCAAAATGCGAGAGGCAGTGTGTTTCCACTTGATGGATCAGTATCAGGTTGGGAGACCTCCTGTGAAGCTCCATCAAGGATGCCTCGGTCACGCACTGTTCAAAATGAGAGGCCGTATGTTTGCACTGTCAATGATTGTCAGGCAAGTTATCGAAGGAAGGACCACCTGACCCGGCACCTTCTACTGCATCAAGGGAAGACCTTTAAATGTCCTATTGATAATTGCAACCTTGAGTTCACTGTGCAAGGCAATATGAAAAGGCATGTGAATGAGATTCATGATGATAGTTCTATCAATGCTAGTGTTAAAAGTGAGCAGCAGTATTTGTGTCCTGAAATTGGCTGCGGAAAGGTTTTTAGATTTGCGTCGAAGCTGCAAAAGCATGAAGATTCTCATGTTAAGCTGGAGTCGGTAGATGTAGTATGCTTAGAGCCTGGTTGCATGAAACATTTCACTAATGCCCAGTGCCTTAAAGCCCATGTTAAGTCCTGCCATCAATATGTGACCTGCGACACTTGTGGTACTAAACAACTAAAGAAGAATATTAAGCGTCACCTCTGTTCACATGAAGCAAACAGCTCATCAGAGACCTTTCACTGCGAATTTAAGGGCTGTGTTTGCACATTCTCAAAAAAATCTAATCTTGATAAGCATAAGAAGGCTGTGCACTTCAAGGAAAAACCTTTTGTCTGTGGATTTCCTGATTGTGGTATGAGATTTGCTTACAAACATGTGCGAGACAATCATGAAAAAACGGGGAAACATGTTTTTACTCTTGGGGATTTTGAAAGAGCTGATGAACAATTCAGGTCAAGGTCAAGGGGAGGGAGGAAGAGAATATGTCCTACTGTTGAAATGTTGGTTAGGAAGAGAGTAACCCCACCTAGTCAATTGGAGGATTGGTTATTTATGCAGGATAGTGAGTAA 1215 0.4222 MGEAMESEEIPKYRDIRRYFCKYCGICRSKKTIITSHINSHHKEEVEKEREEKDPEAGAVKSNTCEECGATFKKHAYLLQHMRSHSLEHWIPDKELQNARGSVFPLDGSVSGWETSCEAPSRMPRSRTVQNERPYVCTVNDCQASYRRKDHLTRHLLLHQGKTFKCPIDNCNLEFTVQGNMKRHVNEIHDDSSINASVKSEQQYLCPEIGCGKVFRFASKLQKHEDSHVKLESVDVVCLEPGCMKHFTNAQCLKAHVKSCHQYVTCDTCGTKQLKKNIKRHLCSHEANSSSETFHCEFKGCVCTFSKKSNLDKHKKAVHFKEKPFVCGFPDCGMRFAYKHVRDNHEKTGKHVFTLGDFERADEQFRSRSRGGRKRICPTVEMLVRKRVTPPSQLEDWLFMQDSE* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0862 404 ProSiteProfiles Zinc finger C2H2 type domain profile. 135 164 IPR013087 -
Apr2g0862 404 ProSitePatterns Zinc finger C2H2 type domain signature. 327 351 IPR013087 -
Apr2g0862 404 MobiDBLite consensus disorder prediction 39 60 - -
Apr2g0862 404 ProSitePatterns Zinc finger C2H2 type domain signature. 206 228 IPR013087 -
Apr2g0862 404 SUPERFAMILY beta-beta-alpha zinc fingers 304 348 IPR036236 -
Apr2g0862 404 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Apr2g0862 404 Gene3D Classic Zinc Finger 162 190 - -
Apr2g0862 404 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Apr2g0862 404 Gene3D Classic Zinc Finger 288 355 - -
Apr2g0862 404 ProSitePatterns Zinc finger C2H2 type domain signature. 137 159 IPR013087 -
Apr2g0862 404 Pfam Zinc finger, C2H2 type 204 228 IPR013087 -
Apr2g0862 404 Pfam Zinc finger, C2H2 type 64 85 IPR013087 -
Apr2g0862 404 Pfam Zinc finger, C2H2 type 135 159 IPR013087 -
Apr2g0862 404 ProSiteProfiles Zinc finger C2H2 type domain profile. 294 324 IPR013087 -
Apr2g0862 404 SUPERFAMILY beta-beta-alpha zinc fingers 162 190 IPR036236 -
Apr2g0862 404 ProSitePatterns Zinc finger C2H2 type domain signature. 238 261 IPR013087 -
Apr2g0862 404 PANTHER ZINC FINGER PROTEIN 11 395 - -
Apr2g0862 404 Gene3D Classic Zinc Finger 125 161 - -
Apr2g0862 404 Gene3D Classic Zinc Finger 2 90 - -
Apr2g0862 404 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Apr2g0862 404 Gene3D Classic Zinc Finger 191 263 - -
Apr2g0862 404 SMART c2h2final6 19 41 IPR013087 -
Apr2g0862 404 SMART c2h2final6 135 159 IPR013087 -
Apr2g0862 404 SMART c2h2final6 204 228 IPR013087 -
Apr2g0862 404 SMART c2h2final6 325 351 IPR013087 -
Apr2g0862 404 SMART c2h2final6 236 261 IPR013087 -
Apr2g0862 404 SMART c2h2final6 264 285 IPR013087 -
Apr2g0862 404 SMART c2h2final6 294 319 IPR013087 -
Apr2g0862 404 SMART c2h2final6 164 189 IPR013087 -
Apr2g0862 404 SMART c2h2final6 63 85 IPR013087 -
Apr2g0862 404 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 233 IPR013087 -
Apr2g0862 404 ProSiteProfiles Zinc finger C2H2 type domain profile. 164 194 IPR013087 -
Apr2g0862 404 PANTHER ZINC FINGER PROTEIN 423 HOMOLOG 11 395 - -
Apr2g0862 404 ProSitePatterns Zinc finger C2H2 type domain signature. 296 319 IPR013087 -
Apr2g0862 404 ProSitePatterns Zinc finger C2H2 type domain signature. 166 189 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0862 132 354 C2H2 Transcription Factor Family AT1G72050 49.818 1.14e-89 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr2g0862 zf-C2H2 0.00073 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0862 K09191 - gmx:100801812 607.831