Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0860 ATGGTAGGAAAAATGAAAATCCCTTGTTGTTCGGTTTGCCAAACGCGGTACAACGAGGAGGAACGTGTTCCACTTCTGCTCCAATGCGGCCACGGCTTCTGCAGAGACTGCCTTTCTAAAATGTTCTCGGAATCGCTGGACGCCACGCTAGCGTGTCCCCGCTGCCGCCACGTGTCTACCGTCGGCAACTCCGTGCAGGCTCTGCGCAAGAACTACGCGGTGCTCGCGCTCATCCACTCCGCCGCCGCGAACAGCGGCGGAGGCGGCGGTGGAGGAGCGAACTTCGATTGCGACTTCACCGACGAGGAGGAGGAGGAGGACGGCGCCGTGGAAGACGGCGATGAGGATGACGAGAAGCGGCGCCGGAACAGCCGCGGATCGCAGGCGTCGAGCTCCGGCGGATGCGAGCCGGTGATCGAGGTAGGAGCGCACCAGGACCTGAAGCTGGTTAGGCGGATTGGGGAGGGTAGGAGGGCCGGCGTGGAGATGTGGATGGCGGTGATCGGCGGCGGGGACGGTGGTCGGCGGTGCCGGCACAACGTAGCGGTGAAGAAGGTGGCGGTGGTGGAGGGGATGGATTTGGATTGGGTGCAGGGGAAGTTGGAGGATTTGCGTAGGGCTTCGATGTGGTGTAGAAATGTGTGCACTTTCCACGGAACAATGAGGGTGGATGAGAGTTTGTGCCTTGTGATGGATAGGTGTTATGGATCGGTTCAGTCTGAGATGCAGCGTAATGAGGGGAGGCTCACTTTGGAGCAAGTCCTAAGATATGGGGCAGACATTGCACGAGGGGTTGTTGAACTTCATGCTGCAGGTGTTGTTTGCATGAATTTAAAACCTTCCAATCTTCTTCTTGATGCAAATGGTCATGCTGTGGTTTCTGATTATGGACTTGCTACAATTCTGAAGAAACCTTCCTGTTGGAAGGCTCGACCAGAGTGTGACTCCTCAAAGATCCATTCCTGTATGGAGTGTATAATGCTCAGCCCACATTATACAGCACCAGAGGCTTGGGAACCTGTGAAGAAGTCATTAAATTTGTTTTGGGATGATGGAATAGGTATATCTTCCGAATCAGATGCCTGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACGGGTTCCATTCCTTGGGCAGGTTTAAGTGCTGAGGAAATCTATCGAGCTGCTGTTAAGGCTAAGAAACTACCTCCACAATATGCTAGTGTAGTTGGTGGTGGAATTCCAAGGGAATTGTGGAAGATGATCGGGGAGTGCTTGCAATTCAAGCCATCTAAAAGGCCTACTTTTAGTGCAATGCTGGCAATATTTCTCCGTCATTTGCAGGAAATACCACGCAGCCCTCCTGCAAGCCCTGATAATGACTTAGTTAAGGGTTCTGTATCAAATGTTACGGAGCCTTCCACAGTACCTGAATTGGAAGTTCCTCAGGAAAACCCAAACCATCTTCATCGGCTTGTGACTGAAGGAGATGTCGCAGGTGTTAGAGATCTTCTTGCAAAGGCTGCATCAGAAAATGGAAGCAATTACATATCTTCTCTATTGGAAGCTCAAAATGCCGATGGAACAGCTCTCCACTTAGCTTGTAGACGTGGTAGTGCAGAACTTGTTGAGACAATTCTGGAGTATAGAGAGGCAAATGTTGATGTATTGGACAAAGATGGAGATCCTCCTCTTGTTTTTGCATTAGCTGCTGGGTCCCCTGAATGTGTTTGTAGCCTTATCAAAAGAAACGCTAATGTACGGTCACGATTGAGAGATGGATTTGGCCCATCGGTAGCTCATGTTTGTGCCTATCATGGCCAACCAGATTGTATGCGAGAGTTATTGTTAGCTGGAGCTGATCCTAATGCAGTGGATGATGAAGGTGAATCTGTTCTGCATAGAGCAGTTGCCAAGAAGTACACAGACTGTGCTCTTGTGATATTGGAGAATGGAGGTTGTAGATCAATGGCAATCTTGAATTCAAAGAATCTGACACCACTGCACTTGTGTGTGGCAACATGGAATGTTACTGTGGTGAAGAGATGGGTGGAAGTTGCAACTCCTGATGAGATAGCTGAAGCAATTGACATACCAAGTCCTATTGGCACTGCCTTGTGCATGGCAGCTGCTTCTAAGAAAGACCATGAAAGTGAAGGGAGAGAACTGGTGCGGATATTGCTGGCAGCAGGAGCTGATCCATCTGCTCAAGATTCACAGAATGGGAGGACAGCTTTGCATACAGCTGCTATGTTAAATGATGTGGACTTGGTTAAGGTTATTCTTGCTGCTGGTGTTGATGTGAACATTCGTAATATGCACAACAGTATACCTCTTCACTTGGCCTTAGCTAGGGGTGCAAAGGCATGCGTTGGGCTGCTTCTGGCTGCTGGGGCAGATTATAATTGGCAGGATGATGATGGTGACAATGCTTTCCATATAGCAGCAGATACAGCAAAAATGATACGTGAAAATCTTGACTGGCTTATTGTTATGCTAATGAATCCTGATGCTGATATTGAAGTCAGAAACCACAGTGGCAAGACACTTCGTGACATATTAGAGGCTCTCCCTCGAGAATGGATATCTGAGGATCTGATGGAAGCACTCGTGAATAAAGGAGTTCATTTGTCTCCTACAATATTTGAAGTGGGAGACTGGGTGAAGTTTAAAAGAACTGTTGTAACACCAGCATATGGATGGCAAGGTGCTAGACCAAAGAGTGTTGGCTTTGTGCAAAGTGTTCCAGACAGAGATAATCTCATTGTTTCATTTTGTTCTGGAGAGGCTCATGTTTTGGCAAATGAAGTTGTAAAAGTTGTTCCATTGGACAGGGGACAACATGTACAACTGAAAGAAGATGTAAAAGAGCCTAGATTTGGTTGGCGACAATCACGCGACAGTATTGGGACAGTATTATGTGTTGATGATGATGGAATTCTCCGTGTTGGGTTTCCTGGAGCATCCAGAGGATGGAAGGCAGACCCAGCAGAGATGGAACGAGTTGAGGAATTCAAGGTTGGAGACTGGGTTCGTATTCGTCCAACCCTTACTTCTGCAAAGCATGGATTAGGATCTGTGACACCAGGAAGCATTGGCATTGTATACTGTATCCGACCAGACAGTAGTCTTTTAATAGAACTGAGCTATCTTCCAAATCCATGGCATTGTGAACCAGAGGAGGTTGAGCATGTTGCTCCTTTTAGAATTGGTGATCGGGTATGTGTGAAGCGATCTGTTGCAGAACCTAGATATGCTTGGGGTGGTGAGACACATCATAGTGTTGGAAGAATAAGTGAGATTGAGAATGATGGTCTCTTAATAATAGATATACCAAATCGACCCATACCATGGCAAGCTGATCCATCTGACATGGAGAAGGTGGAAGATTTTAAGGTTGGAGATTGGGTCAGAGTGAAAGCTTCAGTGTCTTCTCCAAAATATGGATGGGAGGATATTACAAGGAATAGTATTGGGGTAATTCATAGCTTGGAGGAGGATGGTGATATGGGTGTTGCCTTTTGCTTCAGAAGTAAACCTTTTTCTTGCTCCGTCACTGATGTGGAAAAGGTTCCTCCGTTTGAGGTGGGACAAGAAATTCATGTGATGCCATCTGTTACTCAGCCACGGCTTGGGTGGTCAAATGAATCACCAGCTACTGTTGGAAAAATAGTGAGAATCGACATGGATGGTGCTCTCAATGTGAGGGTCACTGGTAGGCAGAGCTTGTGGAAAGTTTCTCCTGGAGATGCTGAACGGCTTCCAGGATTTGAAGTTGGGGATTGGGTACGCTCAAAACCAAGCCTGGGAACCAGACCAAGTTATGACTGGAATACTGTTGGGAGAGAGAGTTTAGCTGTTGTGCATAGTGTACAGGATTCTGGATACTTGGAGTTGGCCTGCTGTTTCCGTAAAGGGAAGTGGATCACTCATTATACAGATGTTGAAAAGGTTTCTAGCTTTAAAGTTGGGCAGTATGTCAGGTTCCGAACTGGTTTGGTTGAACCAAGGTGGGGTTGGAGAGGAGCTCAGCCTGAATCTCAAGGGGTCATAACCAGTATTCATGCTGATGGAGAAGTCAGGGTCGCATTCTTTGGATTGCCAGGATTGTGGAGAGGAGATCCTTCAGACCTTGAGATTGAACAAATGTTTGAAGTGGGAGAGTGGGTGAGGTTAAAAGATGATGAAAGTAATTGGAAATCAATTGGGCCAGGTAGTGTTGGTGTCGTTCAAGGAATAGGGTATGAAGGAAATGAATTGGACAGAAGCGTTTTTGTTGGCTTTTGCGGGGAGCAAGAAAAGTGGGTAGGACCAAGTTCCCATCTTGAAAGATTTGACAAACTCTTTGTTGGACAGAAGGTTAGAGTCAAACAATATGTAAGGCAACCGAGATTTGGATGGTCAGGGCACACCCATGCTAGTGTTGGGACTATACAAGCAATTGATGCTGATGGAAAGCTTCGAATATACACTCCAGCTGGATCCAAAGCATGGATGTTGGATCCATCAGAAGTGGAGGTGGTAGCAGAGGAGCAGCTCTCTATTGGCGACTGGGTAAGGGTTAAAGCATCAGTATCAACCCCAACCCACCATTGGGGGGAAGTGAGTCACTCAAGCATTGGGGTGGTGCATCGGATGGAAGATGAGGATCTGTGGGTGGCATTCTGTTTTATGGAGAGGAGGCTATGGCTTTGCAAAGCATGGGAAATGGAACGGGTTAGGCCATTTAAAGTGGGGGACAAGGTAAGGATCAAAGAAGGACTGGTGACCCCACGATGGGGATGGGGAATGGAAACACATGCCAGCAAGGGACAGGTTGTAGGGGTAGACGCAAATGGAAAACTAAGAATAAAATTTCGGTGGAGGGAAGGTAGGCCCTGGATAGGAGACCCTGCTGATCTTGCCCTTGATGAGAACTGA 4902 0.4745 MVGKMKIPCCSVCQTRYNEEERVPLLLQCGHGFCRDCLSKMFSESLDATLACPRCRHVSTVGNSVQALRKNYAVLALIHSAAANSGGGGGGGANFDCDFTDEEEEEDGAVEDGDEDDEKRRRNSRGSQASSSGGCEPVIEVGAHQDLKLVRRIGEGRRAGVEMWMAVIGGGDGGRRCRHNVAVKKVAVVEGMDLDWVQGKLEDLRRASMWCRNVCTFHGTMRVDESLCLVMDRCYGSVQSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSSKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISSESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAAVKAKKLPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFSAMLAIFLRHLQEIPRSPPASPDNDLVKGSVSNVTEPSTVPELEVPQENPNHLHRLVTEGDVAGVRDLLAKAASENGSNYISSLLEAQNADGTALHLACRRGSAELVETILEYREANVDVLDKDGDPPLVFALAAGSPECVCSLIKRNANVRSRLRDGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCALVILENGGCRSMAILNSKNLTPLHLCVATWNVTVVKRWVEVATPDEIAEAIDIPSPIGTALCMAAASKKDHESEGRELVRILLAAGADPSAQDSQNGRTALHTAAMLNDVDLVKVILAAGVDVNIRNMHNSIPLHLALARGAKACVGLLLAAGADYNWQDDDGDNAFHIAADTAKMIRENLDWLIVMLMNPDADIEVRNHSGKTLRDILEALPREWISEDLMEALVNKGVHLSPTIFEVGDWVKFKRTVVTPAYGWQGARPKSVGFVQSVPDRDNLIVSFCSGEAHVLANEVVKVVPLDRGQHVQLKEDVKEPRFGWRQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGSVTPGSIGIVYCIRPDSSLLIELSYLPNPWHCEPEEVEHVAPFRIGDRVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIDIPNRPIPWQADPSDMEKVEDFKVGDWVRVKASVSSPKYGWEDITRNSIGVIHSLEEDGDMGVAFCFRSKPFSCSVTDVEKVPPFEVGQEIHVMPSVTQPRLGWSNESPATVGKIVRIDMDGALNVRVTGRQSLWKVSPGDAERLPGFEVGDWVRSKPSLGTRPSYDWNTVGRESLAVVHSVQDSGYLELACCFRKGKWITHYTDVEKVSSFKVGQYVRFRTGLVEPRWGWRGAQPESQGVITSIHADGEVRVAFFGLPGLWRGDPSDLEIEQMFEVGEWVRLKDDESNWKSIGPGSVGVVQGIGYEGNELDRSVFVGFCGEQEKWVGPSSHLERFDKLFVGQKVRVKQYVRQPRFGWSGHTHASVGTIQAIDADGKLRIYTPAGSKAWMLDPSEVEVVAEEQLSIGDWVRVKASVSTPTHHWGEVSHSSIGVVHRMEDEDLWVAFCFMERRLWLCKAWEMERVRPFKVGDKVRIKEGLVTPRWGWGMETHASKGQVVGVDANGKLRIKFRWREGRPWIGDPADLALDEN* 1634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0860 1633 Pfam RING-type zinc-finger 10 53 IPR027370 -
Apr2g0860 1633 ProSitePatterns Zinc finger RING-type signature. 29 38 IPR017907 -
Apr2g0860 1633 Pfam Mind bomb SH3 repeat domain 1378 1499 IPR040847 -
Apr2g0860 1633 Pfam Mind bomb SH3 repeat domain 1507 1628 IPR040847 -
Apr2g0860 1633 Pfam Mind bomb SH3 repeat domain 1251 1372 IPR040847 -
Apr2g0860 1633 Pfam Mind bomb SH3 repeat domain 1055 1119 IPR040847 -
Apr2g0860 1633 Pfam Mind bomb SH3 repeat domain 1125 1243 IPR040847 -
Apr2g0860 1633 Pfam Mind bomb SH3 repeat domain 876 993 IPR040847 -
Apr2g0860 1633 Gene3D - 462 688 IPR036770 -
Apr2g0860 1633 ProSiteProfiles Ankyrin repeat profile. 520 553 IPR002110 GO:0005515
Apr2g0860 1633 ProSiteProfiles Ankyrin repeat profile. 768 800 IPR002110 GO:0005515
Apr2g0860 1633 MobiDBLite consensus disorder prediction 446 478 - -
Apr2g0860 1633 ProSiteProfiles Ankyrin repeat profile. 589 621 IPR002110 GO:0005515
Apr2g0860 1633 ProSiteProfiles Ankyrin repeat region circular profile. 768 800 - -
Apr2g0860 1633 ProSiteProfiles Ankyrin repeat profile. 735 767 IPR002110 GO:0005515
Apr2g0860 1633 Pfam Ankyrin repeats (3 copies) 714 798 IPR002110 GO:0005515
Apr2g0860 1633 Pfam Ankyrin repeats (3 copies) 501 582 IPR002110 GO:0005515
Apr2g0860 1633 Pfam Protein kinase domain 178 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0860 1633 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 4 1632 - -
Apr2g0860 1633 ProSiteProfiles Zinc finger RING-type profile. 10 56 IPR001841 -
Apr2g0860 1633 SUPERFAMILY Ankyrin repeat 503 843 IPR036770 -
Apr2g0860 1633 MobiDBLite consensus disorder prediction 104 136 - -
Apr2g0860 1633 MobiDBLite consensus disorder prediction 456 475 - -
Apr2g0860 1633 SUPERFAMILY RING/U-box 9 65 - -
Apr2g0860 1633 CDD RING-HC_ScPSH1_like 9 56 - -
Apr2g0860 1633 ProSiteProfiles Ankyrin repeat region circular profile. 735 766 - -
Apr2g0860 1633 Gene3D Transferase(Phosphotransferase) domain 1 234 461 - -
Apr2g0860 1633 ProSiteProfiles Protein kinase domain profile. 147 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0860 1633 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 85 IPR013083 -
Apr2g0860 1633 Gene3D - 776 862 IPR036770 -
Apr2g0860 1633 SUPERFAMILY Protein kinase-like (PK-like) 143 450 IPR011009 -
Apr2g0860 1633 SMART ANK_2a 554 583 IPR002110 GO:0005515
Apr2g0860 1633 SMART ANK_2a 695 730 IPR002110 GO:0005515
Apr2g0860 1633 SMART ANK_2a 768 797 IPR002110 GO:0005515
Apr2g0860 1633 SMART ANK_2a 735 764 IPR002110 GO:0005515
Apr2g0860 1633 SMART ANK_2a 801 836 IPR002110 GO:0005515
Apr2g0860 1633 SMART ANK_2a 520 550 IPR002110 GO:0005515
Apr2g0860 1633 SMART ANK_2a 657 688 IPR002110 GO:0005515
Apr2g0860 1633 SMART ANK_2a 589 618 IPR002110 GO:0005515
Apr2g0860 1633 SMART ANK_2a 622 653 IPR002110 GO:0005515
Apr2g0860 1633 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 4 1632 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Apr2g0860 1633 Pfam Ankyrin repeats (many copies) 592 639 IPR002110 GO:0005515
Apr2g0860 1633 Gene3D - 696 775 IPR036770 -
Apr2g0860 1633 SMART ring_2 10 55 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0860 Apr-Chr2 13166860 13189707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0860 156 434 MAP Kinase Kinase Kinase AT4G08500 26.573 1.24e-16 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Apr2g0860 Pkinase 7.9e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0860 K16279 - gmx:100777576 3095.45