Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0839 ATGGACTCAGGTTCACCATACCAGTGGATGAGGGAGCTGAGATGGGACTCTCATGGCTTAAATCCAATAAGCCTTCTTATAGACTGTGCTAAATGTGTAGCATCAGGAAGCATCAAGAATGCGGATATTGGGCTTGAGTACATTTCTCAGATTTCATCTCCTGATGGCAATGCTGTGGAAAGAATGGTCACTTATTTCAGTGAAGCACTTGGTTATAGGATAATCAAACATTTGCCTGGTGTATATAAATCTCTTTATTCCTCAAAAACATCACTGTCTTCGGAAGACATCCTAGTTCAAAAGTACTTCTATGAATTGTGTCCCTTTCTCAAGTTTTCATACATGATGACAAACCAAGCCATTGTTGAAGCCATGGAATGTGAACAGGTGGTTCACATTATTGATCTCCATTGTTGTGAGCCTGCTCAATGGATAGACCTTTTACTAACATTAAAGAACCGTCGAGGAGGTCCACCCCATTTGAAAATCACAGGCATCCATGAAAAGAAGCAAGTTTTAGACCAAATGAGCTTACATTTGATCACTGAAGCTGGGAATTTGGATTTTCCTCTACAATTCTATCCAATTGTTAGCAAATTGGAAGATGTTGACTTTGAAAACTTGCCAGTGAAAATAGGAGATGCTCTTGCAATCACTTGTGTTCTTCAGCTGCATTCTCTTCTTGCTACTGATGATGAAATGGTTGGGAGGGTCTCACCAGCCGCGGCAGCATCGATGAATCTGCACAGAGCAGTGCACATGGGCCAGAGGACTTTTGCAGAGTGGCTTGAGAGAGATATGATCAATGCATATATATTGAGTCCTGATTCTGCTTTGTCACCTCTTTCCTTAGGTGCCTCACCTAAGATGGGAATGTTCCTTAGCTCTATGCGAAAACTCCAACCAAAGCTGATGGTGATTACTGAACAAGAATCAAATCTTAATGGATCCAATTTGATGGAAAGAATTGATAGAGCACTGTACTTTTACAGTGCATTGTTTGATTGCTTGGACTCTACTGTTGTGAGAACATCATTAGAGAGACAAAAACTTGAGAGCATGCTTCTTGGGGAGCAGATAAAGAACATTATTGCTTGTGAGGGAGTTGATAGAAAGGAGAGGCATGAGAAACTCGAGAAATGGATTCCGAGGCTTGAAATGGCTGGTTTTGTTAAGGTTCCTTTGAGCTATAATGGAAGGATTGAAGCAAAGAATCTGTTGCATAGATATAGTCATAAATACAAATTTCGAGAAGAGAATGATTGTTTACTTGTGTGCTGGAGTGACAGACCACTATTTTCAGTGTCAGCTTGGAGTTTTAGGAGGTGA 1329 0.4063 MDSGSPYQWMRELRWDSHGLNPISLLIDCAKCVASGSIKNADIGLEYISQISSPDGNAVERMVTYFSEALGYRIIKHLPGVYKSLYSSKTSLSSEDILVQKYFYELCPFLKFSYMMTNQAIVEAMECEQVVHIIDLHCCEPAQWIDLLLTLKNRRGGPPHLKITGIHEKKQVLDQMSLHLITEAGNLDFPLQFYPIVSKLEDVDFENLPVKIGDALAITCVLQLHSLLATDDEMVGRVSPAAAASMNLHRAVHMGQRTFAEWLERDMINAYILSPDSALSPLSLGASPKMGMFLSSMRKLQPKLMVITEQESNLNGSNLMERIDRALYFYSALFDCLDSTVVRTSLERQKLESMLLGEQIKNIIACEGVDRKERHEKLEKWIPRLEMAGFVKVPLSYNGRIEAKNLLHRYSHKYKFREENDCLLVCWSDRPLFSVSAWSFRR* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0839 442 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 440 IPR005202 -
Apr2g0839 442 Pfam GRAS domain family 23 438 IPR005202 -
Apr2g0839 442 ProSiteProfiles GRAS family profile. 13 439 IPR005202 -
Apr2g0839 442 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 4 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0839 Apr-Chr2 12443597 12445870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0839 1 442 GRAS Transcription Factor Family AT1G50420 48.000 1.17e-146 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Apr2g0839 GRAS 6.8e-115 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0839 - - gmx:106798410 784.252