Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0804 ATGTCTCCACAAAGTGTACCTCTTTCACTTTTCATCATAGTCTTTGTCTCATTTGGCTTGTGTCTTGGCTCTCCCCTAGAGGACACATATCATCTAACAAACTATCAACATTACTCTAGGCCAGGGAGGTTGATGAAGCAAAATCATCAACATTTTGGTACCATGCAAAAGGGTCATGGATCAACCCAATCTACAATGCCTCACAAAACGGTTAATGTTGATGACTATGGAGCCAAAGCTTATAATGGAAGTGATGACACTCAGGCATTTGAGAAGGCTTGGAATGAGGCATGTTCTAAAGGGGGTGTTCTTGTAGTCCCTGAAAAAAAGGTCTATCATTTAAAGCCAATAATTTTTTCAGGACCATGCCAACCCAAAACTTCCTTCATGGTCTATGGAACAATCAAAGCATGGCCTAAATTGTCAGCATATGAAGATGATAGACGACTCTGGATTAGGTTTGAAAACGTCACGAATCTCAGAGTTGATGGTGGTGGCACTATCAATGGCAACGGGAGAAAATGGTGGGATAGCTCATGCAAAACTAACCAAAGCCTTCCGTGCAAAGGGGCGCCAACAGCTGTGACTTTCTATGAATGTAACAACTTGACTGTGACAAACCTAAGGTTAAAAAATGCACAGCAAATGCATGTAAGGTTTCAAAGCTGCAACAATGTTATAGCTTCCAATTTGATCGTAAGAGCACCAGGGGACAGCCCAAACACAGATGGAATTCACGTCACCGATACACAGAACATTATCATAAGCAACAGTATAATTGGGACAGGCGATGATTGTATTTCCATAGTAAGTGGCTCCCAAAATGTTCGAGCTACAAACATCAAATGTGGACCAGGACATGGAATAAGCATTGGAAGCTTAGGAGCTGGTAACTCAGAAGCAGAAGTCTCTAATGTGTTGGTAAACAAAGCCATCTTAGCAGGAACTACTAATGGAGTTAGGATAAAGACATGGCAGGGAGGTTCTGGCTTTGCAAAAAACATCAAATTTCTGAATATAGCAATGCGAAATGTGACTAATCCCATAATCATAGATCAAAACTACTGTGACCAGGAAAAACCATGCAAAGAGAAGGATTCAGCAGTGCAATTGAGCAACATTGTGTACCAGAACATTAGAGGAACAAGTGCATCAGAAATTGCAGTGGCACTTAACTGCAGCAAAAGCATTCCTTGCCAAGGAATATACTTACAAGATGTGATTTTAACACCACAAGACAGTGGCAGAACCATTGCTTCATGTGAAAATGTAAAATATGTCCAAAGGGGAAAGTTTTTTCCTCAATGTTATTCTCGAACAAAGAAGGAAGCATGA 1335 0.4075 MSPQSVPLSLFIIVFVSFGLCLGSPLEDTYHLTNYQHYSRPGRLMKQNHQHFGTMQKGHGSTQSTMPHKTVNVDDYGAKAYNGSDDTQAFEKAWNEACSKGGVLVVPEKKVYHLKPIIFSGPCQPKTSFMVYGTIKAWPKLSAYEDDRRLWIRFENVTNLRVDGGGTINGNGRKWWDSSCKTNQSLPCKGAPTAVTFYECNNLTVTNLRLKNAQQMHVRFQSCNNVIASNLIVRAPGDSPNTDGIHVTDTQNIIISNSIIGTGDDCISIVSGSQNVRATNIKCGPGHGISIGSLGAGNSEAEVSNVLVNKAILAGTTNGVRIKTWQGGSGFAKNIKFLNIAMRNVTNPIIIDQNYCDQEKPCKEKDSAVQLSNIVYQNIRGTSASEIAVALNCSKSIPCQGIYLQDVILTPQDSGRTIASCENVKYVQRGKFFPQCYSRTKKEA* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0804 444 ProSitePatterns Polygalacturonase active site. 280 293 IPR000743 GO:0004650|GO:0005975
Apr2g0804 444 SUPERFAMILY Pectin lyase-like 63 438 IPR011050 -
Apr2g0804 444 SMART pbh1 222 249 IPR006626 -
Apr2g0804 444 SMART pbh1 250 271 IPR006626 -
Apr2g0804 444 SMART pbh1 332 353 IPR006626 -
Apr2g0804 444 SMART pbh1 303 324 IPR006626 -
Apr2g0804 444 Gene3D - 56 443 IPR012334 -
Apr2g0804 444 PANTHER - 8 437 - -
Apr2g0804 444 PANTHER POLYGALACTURONASE 8 437 - -
Apr2g0804 444 Pfam Glycosyl hydrolases family 28 104 425 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0804 Apr-Chr2 11401909 11405087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0804 1 436 Glycoside Hydrolase AT3G07970 55.752 1.02e-163 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0804 K01184 - gmx:100796446 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0804 2 11401909 11405087 Apr2g0804 2 11401909 11405087 ECH
Apr5g0588 5 7987404 7990281 Apr2g0804 2 11401909 11405087 PCT
Apr5g0940 5 13870877 13872352 Apr2g0804 2 11401909 11405087 PCT