Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0800 ATGTGCGGTGGTCCTGAGAAATCAAAATCTCTTTCAACTGAGTCCTCATCTGCAGTAGAAGGTTCAACTAACGTGAAAGACATGAAAAATCTAACTGTTCATACTGAAGATTCTTTTTGCTGCTTACTTGAGCTCGCTTCTAACAATGATTTTGAAGATTTTAAGCTAGCTTTAGAGAGGGATACTTCTCTATTAAATGAAGTTGGCCTCTGGTATGTCCGTCAAAGTGGATCTAAACAAATTGTTCTTGAGCACCGAACTCCTTTAATGGTTGCTGCTATGTACGGGAGTATAGATGTTCTTAAACTTATACTCTCATGTCCAGAGGTTGATGTAAATTTTTCATGCGGATCAGATAAAAGCACTGCCCTTCACTGTGCTGCTTCAGGTGGTTCTGTTAATGCAGTGTGTGTTGTGAAGTTGCTCTTATCTGCTGGTGCTGATATTAATTGTGTGGATGCTAATGGAAATCGCCCTGTTGATGTTATTATTGTTCCTCCTAAGCTGGATGGTTTTAAAGCAATTCTTGAAGATCTTCTTTCGGATAGTGCTTCTGATGGATCTGTTGATGACTGTTCTTTTCCTGTAACTGATAATTCAAGTCCTGATTCATCTTCTCATTTATCATCATCTGAAAATGGGTTGCCATCCTCTCCTGTGGCACCAAAGTTTACTGATACAGCTGTTAATTCTACATCAGAGAAGAAAGAATATCCAGTTGATCCATCACTTCCAGATATAAAGAACAGCATATATGCAACAGATGAATTTCGCATGTTTTCATTCAAGGTTCGTCCTTGTTCCCGTGCATATTCACATGATTGGACTGAGTGTCCTTTTGTTCATCCTGGAGAGAATGCTCGTAGGAGAGATCCCAGAAAGTTCCATTACAGCTGTGTGCCATGCCCTGATTTTAGAAAAGGGACTTGTAGACGAGGGGATATGTGTGAGTATGCTCATGGAGTATTTGAGTGCTGGCTACACCCAGCTCAGTATCGAACAAGGCTGTGCAAAGATGGTACTAGTTGCAATAGAAGGGTCTGTTTTTTCGCTCACACAGCAGAAGAGCTGCGCCCATTGTATGTGTCAACTGGATCTGCTGTACCTTCGCCCCGTTCATCTGCCTCCACTCCTAATGTCATGGACATGGCTGCTGCCATGAGCCTCTTTCCTGGTTCGCCATCATCAATTTCTTCCATGTCTCCATCTCCTTTTGCACAGCCAATGTCTCCATCTGCAAGTAGCATTTCTCACTCATCTGCTTGGCCACAGCCAAATGTGCCAGCTCTTCATTTACCTGGAAGCAATATTCAAACTAGTCGATTGAGATCTTCTCTAAGTGCTCGTGACATGCCACCTGAAGACTTGGATGTGTTGCAAGATTTTGATGGTCAGCAACAGCTTTTGAATGACTTGGGCTGTTTCTCACAGCCCCGGCCTGGTGCCATTTCAGTGAGTCGGTCAGGTTGGTCTAAGACACTAACACCATCAAATCTTGATGATCTATTTTCTGCTGAGATTTCTTCATCTCCTCGGTATGCTGACCCAGCAGTGGCTTCTGTGTTTTCCCCAACACACAAATCTGCTGTTTTAAATCAGTTTCAGCAGCTTCAAAGTTCTCTGTCACCCATAAATACCAATGTCTCATCTCCTAGGAATGTGGAGCATCCTCTATTACAGGCTTCATTTGGTGTTTCTTCTCCTGGAAGGATGTCTCCAAGAAGTATGGAACCAATCTCTCCAATGAGTTCCCGATTAGCAGCATATGCTCAGCGTGAAAAACAGCAGCAACAGCTGCGGAGCCTTAGTTCAAGGGACCTTGGTGCTAACAATCCTGCCTCAGTTGTTGGGTCCCCTGTTAACTCCTGGTCTAAGTGGGGATCTCCTAATGGGAATGGAAAAGTAGATTGGTCGGTAAATGGAAATGAGCTAGGTCGATTGCAAAGATCATCCTCATTTGAGCTTGGAAACAATGGGGAAGAGCCTGATCTATCCTGGGTCCAATCCCTTGTCAAGGAATCCCCACCCGAGATCAAAGACAGGTTGGCAGGTTCTGGCCCTATTGCATCTGCTGATGGACTGAATTCCAATCCTCAAGTAGAGTCTATTGATCATTCTGTTTTAGGAGCCTGGCTTGAGCAAATGCAGCTGGATCAGCTTCTAGTCTAA 2169 0.438 MCGGPEKSKSLSTESSSAVEGSTNVKDMKNLTVHTEDSFCCLLELASNNDFEDFKLALERDTSLLNEVGLWYVRQSGSKQIVLEHRTPLMVAAMYGSIDVLKLILSCPEVDVNFSCGSDKSTALHCAASGGSVNAVCVVKLLLSAGADINCVDANGNRPVDVIIVPPKLDGFKAILEDLLSDSASDGSVDDCSFPVTDNSSPDSSSHLSSSENGLPSSPVAPKFTDTAVNSTSEKKEYPVDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGTCRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASTPNVMDMAAAMSLFPGSPSSISSMSPSPFAQPMSPSASSISHSSAWPQPNVPALHLPGSNIQTSRLRSSLSARDMPPEDLDVLQDFDGQQQLLNDLGCFSQPRPGAISVSRSGWSKTLTPSNLDDLFSAEISSSPRYADPAVASVFSPTHKSAVLNQFQQLQSSLSPINTNVSSPRNVEHPLLQASFGVSSPGRMSPRSMEPISPMSSRLAAYAQREKQQQQLRSLSSRDLGANNPASVVGSPVNSWSKWGSPNGNGKVDWSVNGNELGRLQRSSSFELGNNGEEPDLSWVQSLVKESPPEIKDRLAGSGPIASADGLNSNPQVESIDHSVLGAWLEQMQLDQLLV* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0800 722 ProSiteProfiles Zinc finger C3H1-type profile. 301 323 IPR000571 GO:0046872
Apr2g0800 722 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 22 720 - -
Apr2g0800 722 ProSiteProfiles Ankyrin repeat profile. 119 154 IPR002110 GO:0005515
Apr2g0800 722 MobiDBLite consensus disorder prediction 401 421 - -
Apr2g0800 722 Gene3D - 296 359 - -
Apr2g0800 722 PRINTS Ankyrin repeat signature 85 100 IPR002110 GO:0005515
Apr2g0800 722 PRINTS Ankyrin repeat signature 138 152 IPR002110 GO:0005515
Apr2g0800 722 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 321 IPR000571 GO:0046872
Apr2g0800 722 MobiDBLite consensus disorder prediction 191 225 - -
Apr2g0800 722 ProSiteProfiles Ankyrin repeat region circular profile. 119 153 - -
Apr2g0800 722 Pfam Ankyrin repeats (3 copies) 71 153 IPR002110 GO:0005515
Apr2g0800 722 MobiDBLite consensus disorder prediction 587 629 - -
Apr2g0800 722 Gene3D - 22 175 IPR036770 -
Apr2g0800 722 PANTHER UNKEMPT FAMILY MEMBER 22 720 IPR045234 -
Apr2g0800 722 MobiDBLite consensus disorder prediction 1 21 - -
Apr2g0800 722 SUPERFAMILY Ankyrin repeat 31 176 IPR036770 -
Apr2g0800 722 MobiDBLite consensus disorder prediction 677 697 - -
Apr2g0800 722 MobiDBLite consensus disorder prediction 589 629 - -
Apr2g0800 722 MobiDBLite consensus disorder prediction 563 582 - -
Apr2g0800 722 SMART ANK_2a 84 114 IPR002110 GO:0005515
Apr2g0800 722 SMART ANK_2a 119 151 IPR002110 GO:0005515
Apr2g0800 722 SMART c3hfinal6 331 354 IPR000571 GO:0046872
Apr2g0800 722 SMART c3hfinal6 296 322 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0800 Apr-Chr2 11328260 11332785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0800 1 719 C2H2 Transcription Factor Family AT5G12850 53.836 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr2g0800 Ank_2 2.1e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0800 - - gmx:100792574 1218.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0800 2 11328260 11332785 Apr2g0800 2 11328260 11332785 ECH