Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0792 ATGAGGAAACCTGATCTCATGGCCAAAGACAAAATGAACAACAACAACAACAATAACAACAGCAACATTAAGAGCAAGCTAAGAAAAGGGTTGTGGTCACCTGAGGAAGATGAGAAACTCATAAGGTACATGATAACTAAGGGACAAGGTTGTTGGAGTGACATTGCTAGAAATGCTGGTCTTCAAAGGTGTGGTAAAAGTTGCCGCCTGCGTTGGATCAATTACTTGAGACCTGATCTCAAACGTGGTGCATTTTCACCCCAAGAGGAAGAACTCATCATTCATTTGCACTCCATTCTTGGCAATAGATGGTCTCAGATCGCAGCTCGTCTCCCGGGTCGCACAGATAATGAGATAAAGAATTTCTGGAACTCAACACTGAAGAAAAGATTGAAACTGAACAATAATTCCAATTCATCACCAAACAACAGTGACTCATCAGAACCTAGAGATGTCATGGGTGGGATGATGGCCATGAATGAGCATGATCTTATGACCATGTGCATGGACTCCTCTTCATCAACATCAACATCATCCATGCAATCCATGCATGCCATGGTCTTAGCTGACCAATTTGATCCCTTTCCCTTGTTGTCCAACCGTTATGACATGACCGGTGCAGCTGGGTTCCCTGACAACATGGCTGCATGCTTAACCCAAGTTGGTATGGTAGATGATGGGGTTCATGGGGATTATTGTGGGATATTGGAACCTAATAAAATGGGTTTAGAAAGTGACTTTTCCCTTCCTCCACTAGAAAGTAGAAGCATTGAGGACAATAGTAGTATCCCAATTGATGTGAAAAGCCATAACAACCACTTCAATAATAGTTGCTTCAATAACACTGATCATCAAATTCAGAGCTCCAACGACAATGTAGAGGACTTGTTTGGATTTGAAAATCATGGGCAAGGGGAAAACTTGAGAATGGGAGAATGGGACTTTGAGGGTTTGATGCAAGACATGTCATATTTTCCTTCCCTTGATTTCCAAGCTTGA 999 0.4214 MRKPDLMAKDKMNNNNNNNNSNIKSKLRKGLWSPEEDEKLIRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKLNNNSNSSPNNSDSSEPRDVMGGMMAMNEHDLMTMCMDSSSSTSTSSMQSMHAMVLADQFDPFPLLSNRYDMTGAAGFPDNMAACLTQVGMVDDGVHGDYCGILEPNKMGLESDFSLPPLESRSIEDNSSIPIDVKSHNNHFNNSCFNNTDHQIQSSNDNVEDLFGFENHGQGENLRMGEWDFEGLMQDMSYFPSLDFQA* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0792 332 MobiDBLite consensus disorder prediction 10 27 - -
Apr2g0792 332 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Apr2g0792 332 CDD SANT 84 127 IPR001005 -
Apr2g0792 332 SMART sant 28 78 IPR001005 -
Apr2g0792 332 SMART sant 81 129 IPR001005 -
Apr2g0792 332 Gene3D - 83 153 - -
Apr2g0792 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Apr2g0792 332 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Apr2g0792 332 PANTHER TRANSCRIPTION FACTOR MYB83 1 331 - -
Apr2g0792 332 MobiDBLite consensus disorder prediction 1 28 - -
Apr2g0792 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 76 IPR017930 -
Apr2g0792 332 CDD SANT 32 76 IPR001005 -
Apr2g0792 332 MobiDBLite consensus disorder prediction 133 153 - -
Apr2g0792 332 Gene3D - 26 82 - -
Apr2g0792 332 Pfam Myb-like DNA-binding domain 82 126 IPR001005 -
Apr2g0792 332 Pfam Myb-like DNA-binding domain 29 76 IPR001005 -
Apr2g0792 332 SUPERFAMILY Homeodomain-like 27 123 IPR009057 -
Apr2g0792 332 PANTHER MYB DOMAIN PROTEIN 55 1 331 - -
Apr2g0792 332 MobiDBLite consensus disorder prediction 133 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0792 Apr-Chr2 11135215 11137474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0792 1 332 MYB Transcription Factor Family AT3G08500 48.619 3.84e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr2g0792 Myb_DNA-binding 4.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0792 K09422 - gmx:100813660 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0792 2 11135215 11137474 Apr2g0792 2 11135215 11137474 ECH