Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0785 ATGACAGATCCTCAGTCCAATTTATACAGTGGATGCTTCAACTTCATGCCCCTTCATTCTCACTACACTTCTTTCACTAATTCTCAATCCAACCTATTCTCTTCCTACCCTTTTCCATACTCAAACGACAACACCTTTTCCATTCAATCCGAACCTTCATCTTTGTTAGCTCCTCCTTCTTCCCCTCCTCTCAGAGAAGCCCTTCCTCTCATAAACAACATAAGCCTCACAAATCAGAAGGAAAATGAACCCTCAAACAGTACTAGCGCTGTTGAAGAGGAAGGGGAGAAGAAAAAGGACAAAGATGAGAGCCTTTTGATGACTAGTACTGAAGAGGTTGATGATGAAGCTGTGACAGTAGCACTGAGCATAGGGCTTCCTAGCATGGCTGCTTCTGATCTTCTGGGATCAAGGGAGATGTCAACTTGTGCACAAATGGGTGAAAAGGGGGAAGTGAATGTTATTTCTGGACACCCTTTGGATAGATTAAACAAGGTTCAGTATTGGATTCCCTCCCCTTCTCAGATTCTTATTGGTCCTACTCAGTTCTCATGTTCTGTGTGCTCTAAGACTTTCAACAGATATAATAATCTTCAGATGCATATGTGGGGACATGGATCACAATATAGAAAGGGGCCTGATTCTCTAAAAGGGACACAACCATCAGCTATGTTGAGGCTTCCATGCTTTTGTTGTGCCCCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCCCTCAAGGATTTCAGGACTCTTCAAACGCATTATAAGAGAAAGCATGGCATAAAACCCTACATGTGTAGAAAATGTGACAAAGCATTTGCAGTGAAAGGTGACTGGCGGACACATGAGAAGAACTGTGGCAAAATTTGGTATTGCTTATGTGGGTCTGATTTCAAACACAAAAGATCTCTAAAAGATCACATAAAGGCCTTTGGCCATGGCCACGGTGCTATTGACATTGATTGCATGCAAGAAGAGGATGAAGGGGCCTCAGAAATTGAACATGATGGGGAAAGCTCAATGTGA 1035 0.4319 MTDPQSNLYSGCFNFMPLHSHYTSFTNSQSNLFSSYPFPYSNDNTFSIQSEPSSLLAPPSSPPLREALPLINNISLTNQKENEPSNSTSAVEEEGEKKKDKDESLLMTSTEEVDDEAVTVALSIGLPSMAASDLLGSREMSTCAQMGEKGEVNVISGHPLDRLNKVQYWIPSPSQILIGPTQFSCSVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCDKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAIDIDCMQEEDEGASEIEHDGESSM* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0785 344 ProSitePatterns Zinc finger C2H2 type domain signature. 185 205 IPR013087 -
Apr2g0785 344 PANTHER ZINC FINGER PROTEIN WIP2 1 339 IPR043584 GO:0003700|GO:0010468
Apr2g0785 344 Pfam Zinc finger, C2H2 type 183 202 IPR013087 -
Apr2g0785 344 Gene3D Classic Zinc Finger 245 320 - -
Apr2g0785 344 Gene3D Classic Zinc Finger 182 205 - -
Apr2g0785 344 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 339 - -
Apr2g0785 344 SUPERFAMILY beta-beta-alpha zinc fingers 251 287 IPR036236 -
Apr2g0785 344 MobiDBLite consensus disorder prediction 90 104 - -
Apr2g0785 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 183 210 IPR013087 -
Apr2g0785 344 SUPERFAMILY beta-beta-alpha zinc fingers 176 205 IPR036236 -
Apr2g0785 344 SMART c2h2final6 293 316 IPR013087 -
Apr2g0785 344 SMART c2h2final6 183 205 IPR013087 -
Apr2g0785 344 SMART c2h2final6 267 287 IPR013087 -
Apr2g0785 344 MobiDBLite consensus disorder prediction 77 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0785 Apr-Chr2 10900803 10903097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0785 1 337 C2H2 Transcription Factor Family AT3G57670 53.846 1.29e-122 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr2g0785 zf-C2H2_6 5.8e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0785 2 10900803 10903097 Apr2g0785 2 10900803 10903097 ECH