Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0782 ATGTCTAACAGGGTATGCAAGTTCTACGCTCGTGGAGCGTGTTTGAAAGGGGAGCAATGTGATTTTTCTCATGAAAGAAAGGATGATATTTGCACCTATTATCAAAAGGGATTCTGTGCCTACGGTAGCAGATGTAGATATAAGCATGTCAAAGCTTCCCAAGCATTGTCCGTGGCATCGTCTTCATCAAATGGACGCCAATCCCCTGCTTCAGATTCTGTTTTAAGTCAGACGGCTAAAGGTACATCAAATTGGGTTCCTAAGGCTGCAAGGTTGCCTTCATCTTCATCAGACAAGCGTGCAAGGTGTTCACAACGTAAGCATTTGGCCTCTCTGGGGAATGGTGATGTTGGTGAATCAAGTGCTAGTAGTGCTATACCATCTGATCATTTGTTTTGTACATTTTCCGCTGCCAACTGCCCCCTTGGAGATGAATGTTCTCGCATGCATGGAAATCAGTGTTTATACTGTAGAAAATTTTGTTTACATCCTACTGATCGAAAGCAAAAAGAAAATCATTTAAGGACTTGTGAGAAAAAAGAGAAATACCTTCAGGCTGTGAAAGATAGTCAAGAAATAGAATGCAATGTTTGTTTGGAGCGTGTTCTTTCCAAACCTAAACCATCTGACTGTAAGTTTGGGCTGCTCCCTGAATGTGACCATTCTTTCTGTTTATCCTGTATCCGCAATTGGCGTAATAGTGCCCCAACCTCTGGAATGGACATCAATAATACTGCTAATACAGTGAGAACCTGTCCTGTTTGCCGCAAACTCTCGTATTTTGTCATTCCAAGTGGTATTTGGTATTCTACTAAAGAAGAAAAACAGGAAATTATTGACAACTACAAGGCAAACTGCAAACTAATTGACTGCAAGCATTTTGATTTTAGAAATGGGAATTGTCCATTTGGGGCTAGTTGTTTCTACAAGCATACAGTGAAGCCAGGCTCATACACATGGATACATAACAGGCCACCACCTCAACGGAGACAAAACAATTTTGATATGTATGATATGTTGGACATGCTCAGCGAAGTTGATTTATCAAGTTCAGAATATTATTCCATCATGAGGGACTCAGAGTTTTTTGATGATATGGATCCATTTGACATGATGGCTATATCGGATAGGCTCACTGGTGGATCAGGTCCTTGTTTAGGTCCTTTTGATTCTGATGACGAGGAAATGGGTATTTTTCAGATGGCTGCATTGTCAGAAGAACTAGTTGCTGGTGTGGATGATTTTGGTCCTGAAGATTTTGATGATGAAGAATTCAATCCTATGGAGGCAGCCATTTTATCAATGATGATGCATTCTAATATGGATGAAGAGGAGGAAGAAGACAGTGACGAAGACTAG 1359 0.4069 MSNRVCKFYARGACLKGEQCDFSHERKDDICTYYQKGFCAYGSRCRYKHVKASQALSVASSSSNGRQSPASDSVLSQTAKGTSNWVPKAARLPSSSSDKRARCSQRKHLASLGNGDVGESSASSAIPSDHLFCTFSAANCPLGDECSRMHGNQCLYCRKFCLHPTDRKQKENHLRTCEKKEKYLQAVKDSQEIECNVCLERVLSKPKPSDCKFGLLPECDHSFCLSCIRNWRNSAPTSGMDINNTANTVRTCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKLIDCKHFDFRNGNCPFGASCFYKHTVKPGSYTWIHNRPPPQRRQNNFDMYDMLDMLSEVDLSSSEYYSIMRDSEFFDDMDPFDMMAISDRLTGGSGPCLGPFDSDDEEMGIFQMAALSEELVAGVDDFGPEDFDDEEFNPMEAAILSMMMHSNMDEEEEEDSDED* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0782 452 ProSiteProfiles Zinc finger C3H1-type profile. 285 314 IPR000571 GO:0046872
Apr2g0782 452 ProSitePatterns Zinc finger RING-type signature. 219 228 IPR017907 -
Apr2g0782 452 CDD RING-HC_MKRN 195 256 - -
Apr2g0782 452 ProSiteProfiles Zinc finger RING-type profile. 195 256 IPR001841 -
Apr2g0782 452 SUPERFAMILY RING/U-box 184 262 - -
Apr2g0782 452 ProSiteProfiles Zinc finger C3H1-type profile. 25 52 IPR000571 GO:0046872
Apr2g0782 452 Gene3D - 28 107 - -
Apr2g0782 452 Pfam Zinc finger, C3HC4 type (RING finger) 195 255 IPR018957 GO:0046872
Apr2g0782 452 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Apr2g0782 452 Pfam CCCH-type zinc finger 30 49 IPR041367 -
Apr2g0782 452 ProSiteProfiles Zinc finger C3H1-type profile. 1 24 IPR000571 GO:0046872
Apr2g0782 452 MobiDBLite consensus disorder prediction 58 91 - -
Apr2g0782 452 MobiDBLite consensus disorder prediction 58 101 - -
Apr2g0782 452 Pfam RNA-binding, Nab2-type zinc finger 133 151 - -
Apr2g0782 452 Pfam RNA-binding, Nab2-type zinc finger 6 24 - -
Apr2g0782 452 Pfam RNA-binding, Nab2-type zinc finger 290 311 - -
Apr2g0782 452 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 1 451 - -
Apr2g0782 452 SUPERFAMILY CCCH zinc finger 24 49 IPR036855 GO:0046872
Apr2g0782 452 PANTHER MAKORIN-RELATED 1 451 IPR045072 -
Apr2g0782 452 SMART ring_2 195 255 IPR001841 -
Apr2g0782 452 Gene3D - 1 27 - -
Apr2g0782 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 261 IPR013083 -
Apr2g0782 452 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Apr2g0782 452 SMART c3hfinal6 128 152 IPR000571 GO:0046872
Apr2g0782 452 SMART c3hfinal6 27 51 IPR000571 GO:0046872
Apr2g0782 452 SMART c3hfinal6 285 313 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0782 Apr-Chr2 10806939 10811288 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr2g0782 zf-C3HC4 6.4e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0782 K15687 - gmx:100788886 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0782 2 10806939 10811288 Apr2g0782 2 10806939 10811288 ECH