Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0768 ATGGCAGCACTTCACTCTTCTCTGCTCTTTCCACCGAACCTCTTTTCTCTAACAACGCCATCAACTTCCTCCACTCACGCTATCTATTACTTGAGACCCTCGACCACCCACTTTCCACCCCTTCTCACCGCACGACGCCGTTTTCGAAGACCCTTTGCGGTGGCTGAACAAGCTACGGTGTCCGAAGCTGCAAGGAGGCTCTACGTTGGCAACATTCCCCGCACTGTTACCAATGATGAGCTTTCCAAGATCGTTCAAGAGCATGGTGTCGTTGAGAAAGCTGAGGTTATGTATGATAAGTACTCTGGAAGGAGCCGTCGCTTTGCATTTGTAACAATGAAAACTGTTGAGGATGCAAATGCTGTAATCGAGAAACTTAACGGCACTGAAATTGGAGGGCGTGAGATTAAAGTAAACATAACTGAAAAACCTTTATCAACAGTAGAAACGTCTTTACTTCAGGCTGAGGAATCCGAATTTGTTGATAGTCCCCACAAGGTATATGTGGGAAATCTGGCCAAGACAGTAACAACTGATACCCTTAAAACATTTTTTTCTGAGAAGGGAAAAGTTCTTAGTGCCAAGGTTTCGCGGGTCCCTGGGACATCAAAATCCAGTGGGTATGGTTTTGTTACTTTTTCATCAGAAGAGGATGTAGAAGCTGCTATCTCATCTTTCAACAATTCTTTGTTAGAAGGGCAAAAAATTCGTGTGAACAAGGCATAG 726 0.4449 MAALHSSLLFPPNLFSLTTPSTSSTHAIYYLRPSTTHFPPLLTARRRFRRPFAVAEQATVSEAARRLYVGNIPRTVTNDELSKIVQEHGVVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLSTVETSLLQAEESEFVDSPHKVYVGNLAKTVTTDTLKTFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSLLEGQKIRVNKA* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0768 241 Gene3D - 150 241 IPR012677 -
Apr2g0768 241 CDD RRM_HP0827_like 66 143 - -
Apr2g0768 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 241 IPR000504 GO:0003723
Apr2g0768 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 137 IPR000504 GO:0003723
Apr2g0768 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 237 IPR000504 GO:0003723
Apr2g0768 241 Gene3D - 49 149 IPR012677 -
Apr2g0768 241 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 1 241 - -
Apr2g0768 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 143 IPR000504 GO:0003723
Apr2g0768 241 PANTHER OS02G0815200 PROTEIN 1 241 - -
Apr2g0768 241 SUPERFAMILY RNA-binding domain, RBD 57 143 IPR035979 GO:0003676
Apr2g0768 241 SMART rrm1_1 166 239 IPR000504 GO:0003723
Apr2g0768 241 SMART rrm1_1 66 139 IPR000504 GO:0003723
Apr2g0768 241 SUPERFAMILY RNA-binding domain, RBD 160 241 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0768 Apr-Chr2 10336925 10341137 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0768 51 238 Eukaryotic Initiation Factors Gene Family AT1G22760 27.660 2.23e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0768 K13126 - gmx:100783567 357.066