Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0742 ATGGAGCTTGGTTTGAGCTTAGGAGACACGTCAAGGCCTCTACTTGGGTTCGTGGAAAAGCCTCGTGAAGCTTCCAACCAACTCGGGTTAAGCTTCAACACCACGTTATCAATAGGTCCAATCATCACTAGACAAAAAGATCAAGAAGAAGAAGAAGAAGCAAAACCAAAGAAAAACACCAACACTCATATAGCTGAAGATCCTTGTGATCTTTCCTCAAAGTCCAACACCCCAGTTCTTCATCAACTTGATCTCCTTCCTCAGCTATCTTTCCCATGGCAAGCTCCTTCTGAAAATGGGAGTTTATCATCTGAATTGGGGGGTTCATCAAGGGGTTTAGACGTGAACGTGCAACCGGCGGCTGCGGCGGAGGATGAGGCGGAGGAAGTGGCAGCTTTGTCATCGTCACCAAACAGTGCAGCATCATCATTCCAAATGGATCTCTGCATATACAACAACAGAGGAGGGAGTTTCAGTGGTTCAGGAGGGAACTACTATAAGAGAGACTCAGAGGGTGAAGCTTATGATCAAAGGGCTTCTTCAAGAGCCAGTGATGAAGATGAGAATAACGGTGGTGGTGTTGGTGGCGGCAATACAAGGAAGAAACTAAGACTCTCTAAGGAACAATCTGCTTTCCTTGAAGAGAGCTTCAAAGAACACAACACTCTTAACCCTAAACAAAAACTTGCTCTTGCTAAACAACTCAATCTGCGCCCTCGTCAAGTTGAAGTTTGGTTTCAAAACCGAAGAGCAAGGACTAAATTGAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGGTGTTGTGAGACATTAACGGAAGAGAACAGGAGGCTTCACAAGGAACTTCAAGAATTGAGGGCTTTGAAGACTTCAAACCCATTCTACATGCAATTACCAGCTACTACCTTGACTATGTGTCCTTCTTGTGAGCGCGTGGCTACAAATTCCACCTCCAATTCCTCTTCAGCCACACTTAGTGCCACTATCAACGCTAATAATACAGGAGCCAATGCCACAGCCACAGCCACAGCCAAAACTAGCAATGACTCCACCTCCAAAGCCATTGGATTCCCCTTTGGTAAACCAAGGTTTCATCCATTTGTTCACACCAACCAACCCCATCAACACCAGTCCCCAGCATCTTGA 1149 0.4543 MELGLSLGDTSRPLLGFVEKPREASNQLGLSFNTTLSIGPIITRQKDQEEEEEAKPKKNTNTHIAEDPCDLSSKSNTPVLHQLDLLPQLSFPWQAPSENGSLSSELGGSSRGLDVNVQPAAAAEDEAEEVAALSSSPNSAASSFQMDLCIYNNRGGSFSGSGGNYYKRDSEGEAYDQRASSRASDEDENNGGGVGGGNTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNSTSNSSSATLSATINANNTGANATATATAKTSNDSTSKAIGFPFGKPRFHPFVHTNQPHQHQSPAS* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0742 382 Gene3D - 204 254 - -
Apr2g0742 382 Pfam Homeobox associated leucine zipper 256 290 IPR003106 GO:0006355|GO:0043565
Apr2g0742 382 MobiDBLite consensus disorder prediction 44 73 - -
Apr2g0742 382 MobiDBLite consensus disorder prediction 120 139 - -
Apr2g0742 382 Pfam HD-ZIP protein N terminus 62 144 IPR006712 GO:0005634
Apr2g0742 382 MobiDBLite consensus disorder prediction 363 382 - -
Apr2g0742 382 MobiDBLite consensus disorder prediction 169 201 - -
Apr2g0742 382 SUPERFAMILY Homeodomain-like 182 257 IPR009057 -
Apr2g0742 382 Pfam Homeodomain 200 254 IPR001356 GO:0003677
Apr2g0742 382 ProSitePatterns 'Homeobox' domain signature. 231 254 IPR017970 GO:0000981|GO:0006355
Apr2g0742 382 Coils Coil 269 292 - -
Apr2g0742 382 CDD homeodomain 200 257 IPR001356 GO:0003677
Apr2g0742 382 SMART halz 256 299 IPR003106 GO:0006355|GO:0043565
Apr2g0742 382 ProSiteProfiles 'Homeobox' domain profile. 196 256 IPR001356 GO:0003677
Apr2g0742 382 PANTHER PROTEIN, PUTATIVE-RELATED 49 375 - -
Apr2g0742 382 PANTHER - 49 375 - -
Apr2g0742 382 SMART HOX_1 198 260 IPR001356 GO:0003677
Apr2g0742 382 MobiDBLite consensus disorder prediction 169 185 - -
Apr2g0742 382 MobiDBLite consensus disorder prediction 44 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0742 Apr-Chr2 9702085 9704517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0742 111 331 Homeobox Transcription Factor Family AT5G47370 58.296 1.57e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr2g0742 HD-ZIP_N 3.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0742 K09338 - gmx:100778742 498.434