Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0740 ATGGAGCTTGATTTGAATCAGGAGTCTTTGGGCAATATAGAAGAGCGTATTAGACGCCTAGAAGCAGTAGTTTTCAGGGCAAGGCAGCGTCAGAGGCAGCGACAGGGTCACGCTCCAATTCAGATAACTAACTTTGCAGGAGAATTGATAGCAGCTAATGTTCAAGATGAAGGCATTGTGAGCCAGGAAGAGGCTGGTATTGATATTGAAAGAGAGATTGTGGAAGGTGGGAAAAGGGGGAAACGCAAGGCTACCTATTTGATTGGTAAAGCATTAGGCGTTGAAACATATACCGATGAGGCTGGGGGTTGCGCTGGAAATTTGTTTGATTGTAATATATGCTTGGACATGGCAAGAGATCCTGTTTTGACATGCTGTGGTCACTTGTTTTGTTGGCCATGCTTTTATAAGTTGCCATATGCTTATTCAAATGCAAAGGAATGTCCAGTTTGTAAAGGAGAGGTCACTGACGAAGGTGTTATCCCAATTTATGGCAATGCAAATGTTGATAGCAGTGGCCAGTTGGAACTGAATGAAACTGAATTGAGAGTTCCTGCTCGACCCCATGCGCCTCGAATTGAGAGTTTTAGACAGCGGTTCAGAAACCAGGTAGCTTCTTTTACACCGCAGGATATGCTGCGGTTTGGTAGTTTTTCTGGTGGGTTAGGAGAATAA 675 0.4415 MELDLNQESLGNIEERIRRLEAVVFRARQRQRQRQGHAPIQITNFAGELIAANVQDEGIVSQEEAGIDIEREIVEGGKRGKRKATYLIGKALGVETYTDEAGGCAGNLFDCNICLDMARDPVLTCCGHLFCWPCFYKLPYAYSNAKECPVCKGEVTDEGVIPIYGNANVDSSGQLELNETELRVPARPHAPRIESFRQRFRNQVASFTPQDMLRFGSFSGGLGE* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0740 224 Pfam Zinc finger, C3HC4 type (RING finger) 110 156 - -
Apr2g0740 224 SMART ring_2 111 151 IPR001841 -
Apr2g0740 224 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 10 206 - -
Apr2g0740 224 ProSiteProfiles Zinc finger RING-type profile. 111 152 IPR001841 -
Apr2g0740 224 Coils Coil 3 30 - -
Apr2g0740 224 CDD RING-HC_AtRMA_like 109 153 - -
Apr2g0740 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 204 IPR013083 -
Apr2g0740 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 10 206 IPR045103 GO:0005783|GO:0006511|GO:0061630
Apr2g0740 224 SUPERFAMILY RING/U-box 107 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0740 Apr-Chr2 9558298 9560624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0740 92 214 C3H Transcription Factor Family AT3G58030 48.387 1.79e-36 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0740 K10666 - gmx:100780540 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0740 2 9558298 9560624 Apr2g0740 2 9558298 9560624 ECH