Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0728 ATGGCGACGGCGACGGCGGCGGAGGCAGAATTGAAAACCTACTGGTGTCACGAGTGTGACATGAGCGTGTCCCTCACTTTCCCTCCCTCGCCCCTTCTTTGCCCTCATTGCCACACTCATTTTCTCGAACTCATGGACTCTCCCTTCTCCCAAAACGACGCCGAATCACCCTTCCCCTCTTCGGCTCTATTCGACGTCGTTTTCCAAGACGCACTCGCCTTACTTTCCCCGCGCCAAACCCTTCCCTCCAAAACCCGCGCACTTCCGTTAATCTCCGTTACGCCCGCGTTACTCTCCGACCTCGACCCAAACGGCGTCGTTCTCTGCGCCGTGTGTAAGGACCAAATCGCCCTCCACGCCGAGGCCAAACAGCTCCCTTGCAAACACCTCTACCACGCCGATTGCATCACGCCGTGGCTCGACCTTCACGCTTCGTGCCCCCTCTGCAGGTTCCAGATAGAAGATGAAGAGGAAGAGGATGACGCCGTTATGACGGAGATGAGGAGGGAACTCATTGCAAGGCTGACGGAGTTGACGGAGGGCGATTTCTACGGATTGAGGACCACGCTCAATCACATTGCTTCCCGCCACGCTCTTATCGAAGAGAACGAGAATCGTGCTCGAATGAGTGAGCCTCGCGAAGGCTTTGCTCGTGCTGATGGAGAATCAGGTATATAG 678 0.5634 MATATAAEAELKTYWCHECDMSVSLTFPPSPLLCPHCHTHFLELMDSPFSQNDAESPFPSSALFDVVFQDALALLSPRQTLPSKTRALPLISVTPALLSDLDPNGVVLCAVCKDQIALHAEAKQLPCKHLYHADCITPWLDLHASCPLCRFQIEDEEEEDDAVMTEMRRELIARLTELTEGDFYGLRTTLNHIASRHALIEENENRARMSEPREGFARADGESGI* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0728 225 MobiDBLite consensus disorder prediction 204 218 - -
Apr2g0728 225 Pfam Ring finger domain 109 150 IPR001841 -
Apr2g0728 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 167 IPR013083 -
Apr2g0728 225 SUPERFAMILY RING/U-box 108 154 - -
Apr2g0728 225 Pfam zinc-ribbon 13 45 IPR039525 GO:0061630
Apr2g0728 225 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 77 207 - -
Apr2g0728 225 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 2 49 - -
Apr2g0728 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 49 - -
Apr2g0728 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 77 207 - -
Apr2g0728 225 MobiDBLite consensus disorder prediction 204 225 - -
Apr2g0728 225 ProSiteProfiles Zinc finger RING-type profile. 109 150 IPR001841 -
Apr2g0728 225 SMART ring_2 109 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0728 Apr-Chr2 9214964 9217724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0728 7 70 C3H Transcription Factor Family AT3G60080 45.714 5.43e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0728 K11982 - gmx:100775530 325.094