Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0684 ATGGGCCATCGTTGCTGCAGCAAACAGAAGATCAAGAGAGGATTGTGGTCTCCTGAAGAAGATGAGAAACTGGTCAGATATATCAACACACATGGACATAAAAGTTGGAGTTCTGTCCCAAAGTTTGCAGGCTTGCAGAGATGTGGAAAGAGTTGCAGGTTGAGATGGATTAATTATCTGAGGCCAGATCTGAAGAGGGGTTCCTTCACTGCTGAAGAAGAGCAGATCATAATTGACATTCATAGAATTCTGGGAAACAGATGGGCACAAATAGCCAAGCACCTACCTGGAAGAACAGACAACGAGGTCAAGAATTTCTGGAACTCTTGCATCAAGAAAAAGCTCATTTCTCAAGGGTTAGACCCACAAACCCACACTCTACTCTCTTCTCACAGGAGAAACACGGCATGCACCATCTCTAACATCCCCCAAAATTCCAACTCTATTTTTATTATGAGTTCACATATGCCAAATGCACCCATGGAAACCTCTACTCAAACCTTTTGTTCACTCCCCAAAGCACCGCCAAACATTGTTCGAACTCCCTCATGCATTGTTTCCTCTGAATATCAAACATCCACCATTGTTTCAAATAAATTCTCAGATTTGCCTCACGAACTACTAATAGAGAACAACACCAACATTTGTTCACCTTCGTATATGAACCCTCCGTCAGTTGAATTGCCGAACAATGAAAGCAGTGTTTGGGTTTCAAGAGTTAATTCTGAAGATTTCAGTGCTCAAACACTAGGAGAGGGAACACAAGTGCAGGTGCAGCAAGAGAAGGACATGAACTGTGAGAAGGGAATTGATATCAGAGAAGCTAACAAAGCCAATCTTGAAACCAACGTTTCTTTTGAGAGTTCTAACTTTGATTTTGGGTTGTTGGAGTGTGTACTTAATTCTGAATTTATGTCCCATGATCTCAACTGTATGGATGAACTTGCATGGAACTTTTAG 960 0.4167 MGHRCCSKQKIKRGLWSPEEDEKLVRYINTHGHKSWSSVPKFAGLQRCGKSCRLRWINYLRPDLKRGSFTAEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHTLLSSHRRNTACTISNIPQNSNSIFIMSSHMPNAPMETSTQTFCSLPKAPPNIVRTPSCIVSSEYQTSTIVSNKFSDLPHELLIENNTNICSPSYMNPPSVELPNNESSVWVSRVNSEDFSAQTLGEGTQVQVQQEKDMNCEKGIDIREANKANLETNVSFESSNFDFGLLECVLNSEFMSHDLNCMDELAWNF* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0684 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Apr2g0684 319 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Apr2g0684 319 PANTHER BNAC05G40480D PROTEIN 1 307 - -
Apr2g0684 319 CDD SANT 68 108 IPR001005 -
Apr2g0684 319 PANTHER MYB DOMAIN PROTEIN 55 1 307 - -
Apr2g0684 319 Gene3D - 13 65 - -
Apr2g0684 319 CDD SANT 16 60 IPR001005 -
Apr2g0684 319 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Apr2g0684 319 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Apr2g0684 319 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Apr2g0684 319 Gene3D - 68 138 - -
Apr2g0684 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Apr2g0684 319 SMART sant 65 113 IPR001005 -
Apr2g0684 319 SMART sant 12 62 IPR001005 -
Apr2g0684 319 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0684 Apr-Chr2 8458128 8467731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0684 1 319 MYB Transcription Factor Family AT3G12720 48.615 2.19e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr2g0684 Myb_DNA-binding 3.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0684 K09422 - gmx:100791209 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0684 2 8458128 8467731 Apr2g0684 2 8458128 8467731 ECH