Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0680 ATGGCAGCTTTGAACGTTAGTCGCATGGCTCTGCGATCGTGGAAGCTTTTCTGTCGCCCTTCCCCTCTTCTCTCTATGAAGATGCATCCATCCTCTCCTCCCCTCACTCGAAAGATAAGCATCGATGCAAGGGGTGTTGCTTCCCAGCTTAATAGTTCTGGATTGTTGAGGACACAGGGCCTTATTGGAGGGAAGTGGACTGATGCTTATGATGGCAAAACCATAGAGGTTTTTAATCCAGCAACTGGTGAATCTATTGTAAATGTTGCTTGCATGGGTGGAAGAGAGACGAATGATGCAATTTCTGCGGCCTATGATGCATATGGATCATGGAGCAAAATCACTGCTGCTGAGCGGAGCAAATTTCTGAGGAAATGGTATGATTTGCTAATGGCACATAAAGAAGAACTTGCACAACTTATAACCTTGGAGCAAGGGAAACCTCTTAAAGAGTCTATTGGTGAGATAAACTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGTGTATATGGAGATATAATTCCTGCACCATTAACTGATAGGCGATTGTTTGTTCTTAAGCAGCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATAACTCGGAAGGTTGGTCCAGCCCTTGCATGTGGCTGTACGGTGGTCATAAAGCCCTCTGAACTTACGCCTCTCACTGCTTTAGCTGCAGCAGAGCTTTCCATTCAAGCTGGAATACCAGCGGGTGTTGTGAATGTGGTAATGGGAAATGCTCCTGATATTGGGGACGCTATACTTGCAAGTCCACAGGTAAGGAAGATCACGTTCACAGGCTCAACAGCTGTTGGAAAGAAATTGTTGGCTGGTTCTGCAGAGACGGTTAAAAAAGTATCTCTGGAACTTGGTGGCAATGCACCTTGCATAGTTTTTGATGATGCTGACCTGGATGTTGCAATAAAAGGAACTCTTGCAGCAAAGTTCCGCAATAGTGGACAAACATGTGTCTGTGCAAATAGAATTCTTGTGCAAGAAGGTATATATGAGAAATTTGCAAATGCTTTGCTTGATGCTGTTCAGAATATGAAAGTTGGGGATGGTTTTGGTGATGGTGTGGTTCAGGGTCCTCTGATCAATGAAGCCGCTGTCAAAAAGGTTGAGTCCTTAATTCATGATGCCACCTCAAAGGGGGCAAAAGTAATTCTTGGGGGTAAAAGACATAGCCTTGGATTAACTTTTTATGAACCTACAGTCATCCGCGATGTCAACAATGAGATGCTCATATCAAGACAGGAAGTATTTGGACCTGTTGCACCCCTTTTGAGATTCAAAACTGAACAGGATGCTATCAGAATTGCAAATAACACTAACGCAGGTTTGGGCTCATATATATTTACAAACAGTATCCAACGATCATGGCGTGTTGCTGAGGCTCTTGAATATGGACTTGTGGGTGTTAATGAAGGAGTAATTTCGACTGAGGTGGCTCCATTTGGTGGTTTTAAACAGTCTGGTCTTGGAAGAGAAGGCTCCAAATATGGGATGGATGAATATTTGGAGATCAAATACGTATGCTTGGGAAACATGAACAAAGATTGA 1602 0.4376 MAALNVSRMALRSWKLFCRPSPLLSMKMHPSSPPLTRKISIDARGVASQLNSSGLLRTQGLIGGKWTDAYDGKTIEVFNPATGESIVNVACMGGRETNDAISAAYDAYGSWSKITAAERSKFLRKWYDLLMAHKEELAQLITLEQGKPLKESIGEINYGAGFIEFAAEEAKRVYGDIIPAPLTDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPAGVVNVVMGNAPDIGDAILASPQVRKITFTGSTAVGKKLLAGSAETVKKVSLELGGNAPCIVFDDADLDVAIKGTLAAKFRNSGQTCVCANRILVQEGIYEKFANALLDAVQNMKVGDGFGDGVVQGPLINEAAVKKVESLIHDATSKGAKVILGGKRHSLGLTFYEPTVIRDVNNEMLISRQEVFGPVAPLLRFKTEQDAIRIANNTNAGLGSYIFTNSIQRSWRVAEALEYGLVGVNEGVISTEVAPFGGFKQSGLGREGSKYGMDEYLEIKYVCLGNMNKD* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0680 533 CDD ALDH_F5_SSADH_GabD 77 527 - -
Apr2g0680 533 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 301 308 IPR029510 GO:0016491
Apr2g0680 533 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 494 IPR016163 GO:0016620
Apr2g0680 533 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 72 519 IPR016162 GO:0016491
Apr2g0680 533 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 329 340 IPR016160 GO:0016491
Apr2g0680 533 Pfam Aldehyde dehydrogenase family 66 525 IPR015590 GO:0016491
Apr2g0680 533 SUPERFAMILY ALDH-like 55 531 IPR016161 GO:0016491
Apr2g0680 533 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 53 530 - -
Apr2g0680 533 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 53 530 - -
Apr2g0680 533 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 77 523 IPR010102 GO:0009013|GO:0009450
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0680 Apr-Chr2 8304662 8326495 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0680 37 532 Aldehyde Dehydrogenase Gene Family AT1G79440 79.435 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0680 K17761 - gmx:100808318 940.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0680 2 8304662 8326495 Apr2g0680 2 8304662 8326495 ECH